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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
orange1.1g020103m |
Common Name | CISIN_1g020026mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
bZIP |
Protein Properties |
Length: 332aa MW: 36944.1 Da PI: 5.4257 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
orange1.1g020103m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 31.4 | 4.2e-10 | 130 | 185 | 5 | 60 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60
kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + l
orange1.1g020103m 130 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLS 185
9*****************************************99887766666555 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 332 aa
Download sequence Send
to blast |
MESQDPPNPN PNPPTRGPYH RRSQSEVQYR IPDDMDLVSD PISDPLFDGP GGSEDDLFCS 60 YMDMDKIGSK PTGDDPKHEN ANVSVGARPR HRYSNSIDGT TSSSSVLESI EAKKAMDPDK 120 LAELWTVDPK RAKRILANRQ SAARSKERKA RYISELERKV QTLQTEATTL SAQLTLFQRD 180 TTDLSTENTE LKLRLQAMEQ QAQLRDALNE ALKKEVERLK VATGEMMTPT DTYNLGMQPI 240 PYNQSLFYPH HPQTGPGDTQ IVQLPEFHPF QPNMSTPHQP MLATANSHAF SEMLQQDPLG 300 RLQGLDINGR NSHLVKSEGP SISASESSST F*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269|PubMed:27896439}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Pawar V, et al.
A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] - Gibalová A, et al.
Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] - Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]
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