PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g020051m
Common NameCISIN_1g020051mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRF
Protein Properties Length: 333aa    MW: 36605.4 Da    PI: 8.4721
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g020051mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.56.5e-2586130145
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                        d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  orange1.1g020051m  86 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 130
                        79****************************************986 PP
2QLQ63.94.1e-222460137
                QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                       s+FT +Q+q+L++Q+l++Ky++a++PvPp+L+++iqk
  orange1.1g020051m 24 SPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQK 60
                       89*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.1E-122460IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.3952560IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.0E-162559IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.76286130IPR014977WRC domain
PfamPF088793.8E-2187129IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MNSGNGGGGA GGAGGLGMMG MRASPFTVSQ WQELEHQALI FKYMVAGLPV PPDLVLPIQK  60
SFESISHRFF HHPTMGYCSF YGKKVDPEPG RCRRTDGKKW RCSKDAYPDS KYCERHMHRG  120
RNRSRKPVES QTITQSSSTV TSLTATGSSG GTGSYQNLPL HAFGNPQGTT SGTNQSHYHV  180
DSISCGIPNK DYRYLQVQGL KPEVGEHSFF TEASGSNRGL QMDSPIDSAW PLMQSRVSSH  240
PQSKSSNTSI LQNDYPQHSF FNSEFTSGEP VKQEGQSLRP FFDEWPKTRD SWSGLEDERS  300
HQTSFSTTKL SISIPMASSD FSATSSRSPH DN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.83600.0flower
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437422.10.0growth-regulating factor 4
RefseqXP_006484683.10.0growth-regulating factor 4-like
RefseqXP_006484684.10.0growth-regulating factor 4-like
SwissprotQ6AWY61e-93GRF3_ORYSJ; Growth-regulating factor 3
TrEMBLA0A067EAQ20.0A0A067EAQ2_CITSI; Uncharacterized protein
STRINGXP_006484683.10.0(Citrus sinensis)
STRINGXP_006484684.10.0(Citrus sinensis)
STRINGXP_006437422.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143391019
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.15e-46growth-regulating factor 5