PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g018208m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRF
Protein Properties Length: 360aa    MW: 39616.2 Da    PI: 9.1476
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g018208mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC71.97.5e-2374118145
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                        d+epgrCrRtDGKkWRCs+++ +++k+CErH++r+r rsrk++e+
  orange1.1g018208m  74 DPEPGRCRRTDGKKWRCSKDAHPNSKYCERHMNRSRYRSRKPVES 118
                        79****************************************986 PP
2QLQ59.21.2e-201347236
                QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                       +FTa+Q+++L++Q+l++KyL a++PvPp+Ll++i+
  orange1.1g018208m 13 PFTASQWHELEHQALIFKYLKAGLPVPPDLLVPIR 47
                       9********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.7E-121248IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.2E-161347IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.5031348IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.4574118IPR014977WRC domain
PfamPF088794.4E-1975117IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MSGSGSLSSS VAPFTASQWH ELEHQALIFK YLKAGLPVPP DLLVPIRTSL KFLSSSLFHH  60
PTFGYCSYFG KKIDPEPGRC RRTDGKKWRC SKDAHPNSKY CERHMNRSRY RSRKPVESQN  120
TSQSLSTTVG VDIGGNRSSI GSGGGGGSRS LSFQNPPLQP LGTREGLCFR SNMSQSQMAA  180
IPYGIPNKEY SGQYRLQELK PEGNDGVLSM ASESLRGFTM NSSVDNSWCV TTSGSSSIPL  240
SDQRSGAFLQ NSCLPMQTLQ DFDSLIGNGA TSKQQQQHYF FGREFDSSRS QKQEHQALQP  300
LPDELPKTID FGYYLDDQRA NKSSLSTTQL SMSTPIASSK FFETSAHSSK DTSMDKFLS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.5280.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432586.10.0growth-regulating factor 4 isoform X1
RefseqXP_006493631.10.0growth-regulating factor 4-like isoform X1
TrEMBLA0A2H5QRM20.0A0A2H5QRM2_CITUN; Uncharacterized protein
STRINGXP_006493631.10.0(Citrus sinensis)
STRINGXP_006432586.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143391019
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-37growth-regulating factor 5