PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g017738m
Common NameCISIN_1g017738mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CO-like
Protein Properties Length: 367aa    MW: 41722.4 Da    PI: 5.9011
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g017738mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.22.6e-061858337
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                       +r+C++++    +l+C++   ++C++C +  H +      H
  orange1.1g017738m 18 MRTCNTCKAAVSTLYCHTHLAYFCDSCDERVHAYnsmalpH 58
                       589*******9*******************99766666666 PP
2CCT65.21.9e-22300343144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        R a++lRY+eKrk R+FeKkirY+sRKa+Ae RpRvKGrF++++
  orange1.1g017738m 300 RVAKVLRYREKRKARRFEKKIRYASRKAYAEARPRVKGRFARKT 343
                        89***************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000210.002451950No hitNo description
PfamPF062035.9E-16300342IPR010402CCT domain
PROSITE profilePS5101716.589300342IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MLNANSSGDG DGYPGDWMRT CNTCKAAVST LYCHTHLAYF CDSCDERVHA YNSMALPHER  60
MWVSAACENG QATFSCNTDA ASLRLSCDAD KHLANFLAHH HHARVPAPPF SDLFTAPSST  120
YLPDPMFDTE KEVTAPTIEV DEDEMDSWLL LEPANHDNQM NSGHTYVQEL DESFGMEYNS  180
CTKHECQDQN NLQQLQCTHR GDNGSDGVVP VQPFQVKDKE EQQKQQQQQE NEYFSRKYEA  240
SKAAFINNPS MSQTVPVSGI LPKATRADIS SSYTKYSQGT NDLFPNFSFF VPLQFSPMNR  300
VAKVLRYREK RKARRFEKKI RYASRKAYAE ARPRVKGRFA RKTEMDFEVD EMFSIEEYGY  360
GIVPSY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440849.10.0zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A067FHK20.0A0A067FHK2_CITSI; Uncharacterized protein
STRINGXP_006440849.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1921777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.12e-45CONSTANS-like 2