PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bZIP

Protein Properties

Length: 427aa MW: 46485.4 Da PI: 6.4603

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g014327m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.3	4.5e-10	229	287	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ l++e+ orange1.1g014327m 229 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAEN 287 9*********************************************9998888777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.8E-16	225	289	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.932	227	290	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.05E-10	229	280	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.3E-10	229	283	No hit	No description
Pfam	PF00170	9.8E-9	229	283	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.94E-25	230	279	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MDKDKSLSHG GIPPPSGRYS SFSPPGNNNF NVKPELPSSS SFPPLAPGGS SSDGSHFGHQ 60 SDSNRFSHDL SRMHDNPPKN VGHRRAHSEI LTLPDDISFD SDLGVVGGAD GPSLSDETEE 120 DLLSMYLDMD KFNASTATSG FQVGEPSAAA APAPTSAAAA GSGISSVENV GVGSTERPRI 180 RHQHSQSMDG STSIKPEMLM SASDEAPSAD SKKAMSAAKL AELALIDPKR AKRIWANRQS 240 AARSKERKMR YIAELERKVQ TLQTEATSLS AQLTLLQRDT NGLTAENSEL KLRLQTMEQQ 300 VHLQDALNDA LKEEIQHLKV LTGQAMPNGG PMMNYPSFGA GQQFYPNNQA MHTLLTAQQF 360 QQLQIHSQKQ QQQFQQHQLH QMQQQQLQQQ QQEQQQQTGE IKMRGSVPSP NQKENTSDVN 420 PSISKD*

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MDKDKSLSHG GIPPPSGRYS SFSPPGNNNF NVKPELPSSS SFPPLAPGGS SSDGSHFGHQ  60
SDSNRFSHDL SRMHDNPPKN VGHRRAHSEI LTLPDDISFD SDLGVVGGAD GPSLSDETEE  120
DLLSMYLDMD KFNASTATSG FQVGEPSAAA APAPTSAAAA GSGISSVENV GVGSTERPRI  180
RHQHSQSMDG STSIKPEMLM SASDEAPSAD SKKAMSAAKL AELALIDPKR AKRIWANRQS  240
AARSKERKMR YIAELERKVQ TLQTEATSLS AQLTLLQRDT NGLTAENSEL KLRLQTMEQQ  300
VHLQDALNDA LKEEIQHLKV LTGQAMPNGG PMMNYPSFGA GQQFYPNNQA MHTLLTAQQF  360
QQLQIHSQKQ QQQFQQHQLH QMQQQQLQQQ QQEQQQQTGE IKMRGSVPSP NQKENTSDVN  420
PSISKD*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.6123	0.0	callus\| fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006442989.1	0.0	probable transcription factor PosF21
Refseq	XP_006478733.1	0.0	probable transcription factor PosF21
Swissprot	Q04088	1e-160	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	V4VSX8	0.0	V4VSX8_9ROSI; Uncharacterized protein
STRING	XP_006478733.1	0.0	(Citrus sinensis)
STRING	XP_006442989.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2445	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-138	bZIP family protein

Link Out ? help Back to Top
Phytozome	orange1.1g014327m

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]