PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g011623m | ||||||||
Common Name | CISIN_1g011623mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 482aa MW: 54678.2 Da PI: 4.2719 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.1 | 1.7e-07 | 321 | 369 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 ++WT+eE+ ++ ++v ++ W+ + ++ Rt ++++s+++++ orange1.1g011623m 321 KNWTKEEENKFHEVVSSYPVSmgknFWDHLSLVFP-SRTKNELVSYYFNV 369 68***************98878888**********.***********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 3.3E-6 | 319 | 372 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-5 | 320 | 378 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.48E-6 | 320 | 370 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.9E-6 | 321 | 369 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.4 | 322 | 370 | IPR017877 | Myb-like domain |
CDD | cd00167 | 1.92E-8 | 322 | 370 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MLCAETRYYI ENLLSSIVGN YKVVFFKLQI YKALDLISES SENNCDFQGE MIHKRPFLDE 60 DCFEFPCKHP KQWECTNYLA PMVHMSPPAD GHQKPQTSGN GDGEQNINRC RDQGRFLFGP 120 VAEVSNGTEK EFEIGSDCIS PLFWANGLFA EGDANSEEVY LSLFPEYFAT EHQIRTFLQS 180 DEIYSSHLDH PPVKSVSIGP EYQADVPEWC LQGSKNSLAH LDGSDHQVRL ERLSGSCLVV 240 DDVQGEKLLG TCVVSMPDSA PSANYYSQSL VTRNDCECLD KGSIRCVRQH VMEAREKLRV 300 NLGHKIFEEL GFHEMGEEVS KNWTKEEENK FHEVVSSYPV SMGKNFWDHL SLVFPSRTKN 360 ELVSYYFNVF ILQKRAEQNR FDPLNIDSDD DEWQRCDLGA AEEDEESGVE FLSNRGVSAY 420 QQDDHVENCQ DDTEGGYLID DCKNDANVVH TVATDEEEDG DVDDIPEPHV RDLFSHSSTD 480 T* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.11971 | 0.0 | seed |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006431271.1 | 0.0 | uncharacterized protein LOC18039444 | ||||
TrEMBL | A0A067GBK8 | 0.0 | A0A067GBK8_CITSI; Uncharacterized protein | ||||
STRING | XP_006431271.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17183 | 2 | 2 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g011623m |