PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g006851m

Common Name

CISIN_1g006873mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 629aa MW: 69814 Da PI: 5.395

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g006851m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.4	2.2e-07	15	37	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G C Gd+C F Hgp orange1.1g006851m 15 VPCIFFQK-GLCIKGDKCAFLHGP 37 69****.***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.6E-4	11	37	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.249	11	38	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.79E-6	12	36	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.7E-5	15	37	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-4	15	37	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 629 aa Download sequence Send to blast
MPAAHASNNS GKQAVPCIFF QKGLCIKGDK CAFLHGPNTA VNKAPQPTAA APANEPPTLK 60 KASGVLQKCT QEQKVPPANV PKAVVVRPEA NKHTHKAETS FPRNAAGNER NAPPPSGTDD 120 EFPRYKVTNV PPVINGNSLI RSNRLHQAHA LDDQSFQHGK DADEFLRESS PGFDVLVDDE 180 LRDSDYYHDE DQYGRTRGHE GRDLNSVNEY DIGRSVDYTS LTEMGRETFR DPRGYDIGSY 240 DHISMQGQYA WEQHMAASDR VLVGDSSNQE RRSYSKSETH NQINESDLRY RLSKHRRANG 300 LRSVVSPDYA PDNQLEEQSH RISTRRDSRH LASQESSLSS RLHGRIKPPR RSLVSGSDLR 360 SERDLERGRN WGSVSPGRPQ TSHQGRLRDR IKGTLEDDYS GGRNFRGPRM MRREMMDDRD 420 ADFAGPKSLS ELKGKKNAES KEQQSLRKRK SLEDHRQPEG GLSFDGPMPL SEILKRKRGA 480 GGATSASTEK SSANMEVENQ KESQGSLVGS SNNTAAQSAV STVSKEVSNY KEAGAVKETE 540 GKNEATHDKS SQLPNASEVE AEDGMIAEEG IEDHDLEADD LRDGEYEYEQ GDEGDYNYEE 600 GENAEGEEEY LEDEDGDDFA KKIGVMFS*

Sequence ? help Back to Top

Protein Sequence Length: 629 aa Download sequence Send to blast

MPAAHASNNS GKQAVPCIFF QKGLCIKGDK CAFLHGPNTA VNKAPQPTAA APANEPPTLK  60
KASGVLQKCT QEQKVPPANV PKAVVVRPEA NKHTHKAETS FPRNAAGNER NAPPPSGTDD  120
EFPRYKVTNV PPVINGNSLI RSNRLHQAHA LDDQSFQHGK DADEFLRESS PGFDVLVDDE  180
LRDSDYYHDE DQYGRTRGHE GRDLNSVNEY DIGRSVDYTS LTEMGRETFR DPRGYDIGSY  240
DHISMQGQYA WEQHMAASDR VLVGDSSNQE RRSYSKSETH NQINESDLRY RLSKHRRANG  300
LRSVVSPDYA PDNQLEEQSH RISTRRDSRH LASQESSLSS RLHGRIKPPR RSLVSGSDLR  360
SERDLERGRN WGSVSPGRPQ TSHQGRLRDR IKGTLEDDYS GGRNFRGPRM MRREMMDDRD  420
ADFAGPKSLS ELKGKKNAES KEQQSLRKRK SLEDHRQPEG GLSFDGPMPL SEILKRKRGA  480
GGATSASTEK SSANMEVENQ KESQGSLVGS SNNTAAQSAV STVSKEVSNY KEAGAVKETE  540
GKNEATHDKS SQLPNASEVE AEDGMIAEEG IEDHDLEADD LRDGEYEYEQ GDEGDYNYEE  600
GENAEGEEEY LEDEDGDDFA KKIGVMFS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.1533	0.0	callus\| flower\| fruit

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006420674.1	0.0	zinc finger CCCH domain-containing protein 17
TrEMBL	A0A067F2V3	0.0	A0A067F2V3_CITSI; Uncharacterized protein
STRING	XP_006420674.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8968	12	15

Link Out ? help Back to Top
Phytozome	orange1.1g006851m