PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g006236m
Common NameCISIN_1g006236mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 656aa    MW: 71633 Da    PI: 7.6206
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g006236mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.6e-06253273526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C+ f++ G C+ Gd C +aHg
  orange1.1g006236m 253 PCPEFRK-GACPKGDGCEYAHG 273
                        8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.0E-1517161IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.65E-1617139IPR020683Ankyrin repeat-containing domain
PfamPF127969.0E-1058130IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.75162140IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0176292IPR002110Ankyrin repeat
CDDcd002042.65E-1464160No hitNo description
SMARTSM002481.2E-497129IPR002110Ankyrin repeat
PROSITE profilePS5008811.83597132IPR002110Ankyrin repeat
PROSITE profilePS5010313.103248275IPR000571Zinc finger, CCCH-type
SMARTSM003560.0026248274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4253274IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.812283307IPR000571Zinc finger, CCCH-type
SMARTSM0035685283306IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MEGGLPKLKD GALYNKSSIL LELSASDDIS AFKREIEEKG FDVDEPSFWY GRRIGSKKMG  60
FEERTPIMIA AMFGSVAVLK YVIETGKVNV NRACGSDGFT ALHCAVAGGA NSSFEVVKLL  120
LSASADVNCV DVYGNKPVDL IPVAMKSPLH SRKRAIELLL KGDHTIFEEE ELVNIPVPQL  180
SKDGTEKKEY PIDVSLPDIN NGVYGTDDFR MYAFKIKPCS RAYSHDWTEC PFVHPGENAR  240
RRDPRKYPYT CVPCPEFRKG ACPKGDGCEY AHGVFESWLH PAQYRTRLCK DEIGCARKVC  300
FFAHKPEELR PVYASTGSAM PSPSPVSASA VDMTTLSPLS LGSASMPLPA TSTPPMSPLA  360
AASSPKSGNL WQNKVNLTPP ALQLPGSRLK TAFSARDLDL LLGLENRTSN LQQQQLLDEI  420
SSLSSPSSWS KEYSRIGDVN RNLDKVFESL DPSMLSQLQG MSQKQSTPTQ LQSPTGLQMR  480
QNMNQLRASY PAANLSSSPV RKPSSFGYDS SAAVAAAVMN SRSSAFAKRS QSFIDRGAVT  540
SRAGLSMVSN PPTIRSSNLS DWSSPDGKLD WGVQGDELNK LKKSASFGFR SNNITTPTTK  600
GFTPSSSNVD EPDVSWVNSL VKDVTPEGQG LFGAEKQQYN PWMEQMYIEQ EQMVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.40810.0flower| fruit| seed| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435753.10.0zinc finger CCCH domain-containing protein 29
RefseqXP_006486308.10.0zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A067FRY30.0A0A067FRY3_CITSI; Uncharacterized protein
STRINGXP_006486308.10.0(Citrus sinensis)
STRINGXP_006435753.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein