PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna27313.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | BES1 | ||||||||
Protein Properties | Length: 433aa MW: 47024.5 Da PI: 6.8721 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 204.5 | 3.2e-63 | 76 | 218 | 1 | 149 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssa 86 ++++r p+wkErEnnkrRERrRRaiaaki+aGLR++Gnyklpk++DnneVlkALc+eAGw+ve DGttyrkg+kp e+++++ sa mrna27313.1-v1.0-hybrid 76 TSGTRLPSWKERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVELDGTTYRKGCKPVERMDIVDGSA 161 5899********************************************************************************** PP DUF822 87 saspesslqsslkssalaspvesysaspksssfpspssldsislasa..asllpvlsvlslvsss 149 asp+ss++ +s +sy++sp sssfpsp+s++ + +++ +sl+p+l++ls+ sss mrna27313.1-v1.0-hybrid 162 AASPCSSYH--------PSNYASYNPSPGSSSFPSPASSSYAAHQNVdgSSLIPWLKHLSSGSSS 218 *********........999****************9999888876678**********996665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 5.7E-63 | 78 | 213 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MATRGEETNA FVRVTDARWE KRNEYNVLGF GSTEVASSLP FEKCHVHAGA QLESLSFHDP 60 GDIGMYIIQL HAGEMTSGTR LPSWKERENN KRRERRRRAI AAKIFAGLRM YGNYKLPKHC 120 DNNEVLKALC NEAGWTVELD GTTYRKGCKP VERMDIVDGS AAASPCSSYH PSNYASYNPS 180 PGSSSFPSPA SSSYAAHQNV DGSSLIPWLK HLSSGSSSAS SSKLPNMYIH GGSISAPVTP 240 PLSSPTCRTP RMNTDWEQSA QPGWGGQQHS FLPSSTPPSP GRQIIPSPEW FSGIQIPHGP 300 TSPTFSLVSS NPFGFKEEAL AGGGSRMWTP GQSGTCSPAI AAGSDHTADI PMSEVISDEF 360 AFGSCNTAGL VKAWEGERIH EESGSDDLEL TLGCSKTRQV NLVLKFNLVD QMFELLIYSF 420 LPFHLQVNSW TK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 2e-22 | 80 | 151 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 2e-22 | 80 | 151 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 2e-22 | 80 | 151 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 2e-22 | 80 | 151 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00248 | DAP | Transfer from AT1G78700 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna27313.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004294130.1 | 0.0 | PREDICTED: BES1/BZR1 homolog protein 4-like | ||||
Swissprot | Q9ZV88 | 1e-141 | BEH4_ARATH; BES1/BZR1 homolog protein 4 | ||||
TrEMBL | A0A2P6Q9T4 | 0.0 | A0A2P6Q9T4_ROSCH; Putative transcription factor BES/BZR family | ||||
STRING | XP_004294130.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2661 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78700.1 | 1e-123 | BES1/BZR1 homolog 4 |
Link Out ? help Back to Top | |
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Phytozome | mrna27313.1-v1.0-hybrid |