PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna26139.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 583aa MW: 63894.1 Da PI: 8.0325

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna26139.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.1	1.7e-09	267	322	2	55
HHHHHHHHHHHHHHHHH......HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNs......afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR s +f+ Lrel+P++ ++K +Ka+ L +++eYI++Lq mrna26139.1-v1.0-hybrid 267 RSKHSATEQRRRTSNTStlkiiiRFQMLRELIPHS----DQKRDKASFLLEVIEYIQYLQ 322 889*******964443333339******9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.3E-16	262	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.59E-12	264	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.13E-9	267	325	No hit	No description
Pfam	PF00010	3.4E-7	267	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.067	271	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0011	271	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009742	Biological Process	brassinosteroid mediated signaling pathway
GO:1902448	Biological Process	positive regulation of shade avoidance
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 583 aa Download sequence Send to blast
MELPQPRPFG GEGRKPTHDF LSLYSSHSTA QQDPRPPSQG GFLETHDFLQ PLERMGNACA 60 KEETSVETVS PSRSSVEKPA CVAQRPASVE HILPGGIGTY SISHISYFNQ RVPKPEENVF 120 PVAPQASSSH HERNDENSNC SSYAGSGFTL WDESAAKKGK TGKENVAERP GLRGQWTSSE 180 RPSQSSSTNN RNCFSSQSSG QKNLSFMEMM KSAAKGCTQE DELADEEEFA LKKEMSTTTT 240 TATTPYNGEL RVKVDAKSSD QKANTPRSKH SATEQRRRTS NTSTLKIIIR FQMLRELIPH 300 SDQKRDKASF LLEVIEYIQY LQEKVTKYEV PYQGWNQDPA KLMPWHGIEQ VNNQKLGESY 360 CDQSRGMNGG PAPALVFAAA KFEEKSSSVS PTIPGSAQKP VESDTSTETT FRAKDHQSGI 420 TNKAIPFPLS MQSNFLTPVR SGSSAPPFPP RLPSDSDNTS SHTRSMLFPT KTCTADAGVI 480 SDKLKEHELT IEGGRINISS AYSQGLLNTL TQALQNSGVD LSQANISVQI ELGKQACSRM 540 AIPKSIVKEN EIPSMTPGNK HSRISVGEDS EQAQKKLRTG RN*

Sequence ? help Back to Top

Protein Sequence Length: 583 aa Download sequence Send to blast

MELPQPRPFG GEGRKPTHDF LSLYSSHSTA QQDPRPPSQG GFLETHDFLQ PLERMGNACA  60
KEETSVETVS PSRSSVEKPA CVAQRPASVE HILPGGIGTY SISHISYFNQ RVPKPEENVF  120
PVAPQASSSH HERNDENSNC SSYAGSGFTL WDESAAKKGK TGKENVAERP GLRGQWTSSE  180
RPSQSSSTNN RNCFSSQSSG QKNLSFMEMM KSAAKGCTQE DELADEEEFA LKKEMSTTTT  240
TATTPYNGEL RVKVDAKSSD QKANTPRSKH SATEQRRRTS NTSTLKIIIR FQMLRELIPH  300
SDQKRDKASF LLEVIEYIQY LQEKVTKYEV PYQGWNQDPA KLMPWHGIEQ VNNQKLGESY  360
CDQSRGMNGG PAPALVFAAA KFEEKSSSVS PTIPGSAQKP VESDTSTETT FRAKDHQSGI  420
TNKAIPFPLS MQSNFLTPVR SGSSAPPFPP RLPSDSDNTS SHTRSMLFPT KTCTADAGVI  480
SDKLKEHELT IEGGRINISS AYSQGLLNTL TQALQNSGVD LSQANISVQI ELGKQACSRM  540
AIPKSIVKEN EIPSMTPGNK HSRISVGEDS EQAQKKLRTG RN*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00498	DAP	Transfer from AT5G08130	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna26139.1-v1.0-hybrid

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004299270.1	0.0	PREDICTED: transcription factor BIM1
Swissprot	Q9LEZ3	1e-122	BIM1_ARATH; Transcription factor BIM1
TrEMBL	A0A2P6P387	0.0	A0A2P6P387_ROSCH; Putative transcription factor bHLH family
STRING	XP_004299270.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7252	31	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	1e-115	bHLH family protein

Link Out ? help Back to Top
Phytozome	mrna26139.1-v1.0-hybrid

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]