PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna25374.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 615aa MW: 67751.9 Da PI: 6.2249 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.5 | 1.3e-07 | 306 | 343 | 3 | 42 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 +W++++ el++++++++G++ ++ +a ++ gRt+ ++k mrna25374.1-v1.0-hybrid 306 KWSEQDIELFYEGIELFGSD-FHMVALLFP-GRTRDHIKF 343 8*******************.*********.*******95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15963 | 9.3E-23 | 297 | 375 | No hit | No description |
SMART | SM00717 | 2.8E-5 | 303 | 351 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.74E-8 | 306 | 353 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.42E-4 | 306 | 338 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 615 aa Download sequence Send to blast |
MKGAESLTIE HCEIRLETKE FEALNVVSEA PISTGRHAGK FQPKLTVKKG KENPNVPHAE 60 VESTTLPQPA HFKTGEMDEI SLCAFPREDV HNHILPTFGD SIASNPTPSF QANAETTQLD 120 EAEYGDGAHS EGGHKCGTGK ASTASNRPQK RKGSAVDEDA KDGNNTYEDS FDAENTSDFD 180 GNENGEHNSA RRKRVPRKSK IPVSDNEPVQ KRKRTKKAPD EPTEEPTKKF SHSTCRNRRR 240 ADKSLIEMPE DEIDPQKNSI AGSYSTSRIK EAAKLKTQAS NHRDRVSASS FSLNYTSFMK 300 KPRPVKWSEQ DIELFYEGIE LFGSDFHMVA LLFPGRTRDH IKFKHKKEKR KNPLRIDEAL 360 HHRPKDNSKY ALVINEMLKL AGQTEESNSD ELSDMVDLEE EELTQNRGEV TTPELDKIED 420 METDGAAEVQ HEEAAVSEVH SPMKSNQSDH GDDFGGERQS GHHTASDGTG RNGGDIAVGG 480 SSSAVVTTSE NHAKSVFRTP KIPSLPKAEC CKPAEEPQGT PGLMKTEKSS LMEKKGQKRE 540 VCERAKRLSW IGKQARSDTD DGSSGSARPK LKSPLKYKPV VDSDIGRMVV EESAGSSSQA 600 NSSSEPMLCE EVTT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 191 | 213 | RKRVPRKSKIPVSDNEPVQKRKR |
2 | 209 | 216 | QKRKRTKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna25374.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011457825.1 | 0.0 | PREDICTED: uncharacterized protein LOC101303570 | ||||
Refseq | XP_011457826.1 | 0.0 | PREDICTED: uncharacterized protein LOC101303570 | ||||
Refseq | XP_011457827.1 | 0.0 | PREDICTED: uncharacterized protein LOC101303570 | ||||
TrEMBL | A0A2P6QG63 | 0.0 | A0A2P6QG63_ROSCH; Putative transcription factor MYB/SANT family | ||||
STRING | XP_004292009.1 | 1e-164 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3666 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.1 | 8e-20 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna25374.1-v1.0-hybrid |