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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna24932.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C3H | ||||||||
Protein Properties | Length: 463aa MW: 49397.6 Da PI: 8.8414 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.2 | 2.1e-11 | 45 | 71 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ ++C +++rtG+C yG rC+++H++ mrna24932.1-v1.0-hybrid 45 PGVPNCVYYMRTGFCGYGVRCRYNHPR 71 5789*********************96 PP | |||||||
2 | zf-CCCH | 40.1 | 6e-13 | 92 | 116 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++++tGtCk+G++CkF+H++ mrna24932.1-v1.0-hybrid 92 EPVCQYYLKTGTCKFGASCKFHHPK 116 789********************96 PP | |||||||
3 | zf-CCCH | 37.7 | 3.3e-12 | 137 | 162 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ mrna24932.1-v1.0-hybrid 137 GESECSYYLKTGQCKFGLTCKFHHPQ 162 7899********************97 PP | |||||||
4 | zf-CCCH | 35.9 | 1.3e-11 | 293 | 319 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H++ mrna24932.1-v1.0-hybrid 293 PGEPECQYYLRTGDCKFGPSCRYHHPR 319 5799*********************96 PP | |||||||
5 | zf-CCCH | 35.9 | 1.3e-11 | 340 | 365 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + +C f++++G+Ck+G++CkF H++ mrna24932.1-v1.0-hybrid 340 GVQPCTFYLQNGHCKFGSSCKFDHPM 365 6789********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 6.7E-6 | 44 | 71 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.357 | 44 | 72 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-8 | 46 | 71 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.06E-6 | 48 | 73 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.0E-5 | 50 | 71 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.676 | 89 | 117 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.4E-7 | 89 | 116 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-10 | 92 | 116 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-6 | 92 | 116 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-5 | 94 | 116 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.267 | 135 | 163 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.0E-5 | 135 | 162 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.8E-10 | 137 | 162 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.3E-5 | 138 | 163 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-4 | 141 | 161 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.826 | 292 | 320 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.8E-6 | 292 | 319 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.2E-9 | 294 | 319 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.67E-6 | 296 | 321 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-4 | 298 | 319 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.807 | 338 | 366 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-6 | 338 | 365 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-9 | 340 | 365 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-6 | 340 | 369 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-5 | 342 | 364 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MELYGRSPAR NGSNPEWSSG AAETGLEEQM WQLGLTSTES YPERPGVPNC VYYMRTGFCG 60 YGVRCRYNHP RDRAAVVAAV RATGDYPERV GEPVCQYYLK TGTCKFGASC KFHHPKHGGG 120 SLTRAPLNIY GYPLRPGESE CSYYLKTGQC KFGLTCKFHH PQPAGTTVPA SAPQFYQSVQ 180 SPSVPMPEQF GGQSTGLRVA RPPLLPGSYV QGAYGPVLIP PGVVPIPSWN PYSAPLSPAL 240 SPGAQPTVGA TSLYGLTQLS SPPHALARPY TSVPSSVGPS SSSPNEQTFP ERPGEPECQY 300 YLRTGDCKFG PSCRYHHPRD RIAPRTNCLL SPVGLPLRPG VQPCTFYLQN GHCKFGSSCK 360 FDHPMGTMRY SPSASSLDMP VAPYPVGSLL GTLASSSSSE LRPELVSARM PSSGNPSSSS 420 VGLIFSQSGS VSLADVQLSS QTSVPISNGR GTRQGGEVRR SS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna24932.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004309682.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 32 | ||||
Swissprot | Q84W91 | 0.0 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A2P6PWH6 | 0.0 | A0A2P6PWH6_ROSCH; Putative transcription factor C3H family | ||||
STRING | XP_004309682.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF983 | 34 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-178 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna24932.1-v1.0-hybrid |