PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24577.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 366aa    MW: 40673.8 Da    PI: 7.577
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24577.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.7e-12128174555
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              h   Er RR+++++ f++L  llP++   p  K +K++i+ +Av YIk L+
  mrna24577.1-v1.0-hybrid 128 HIYTERERRKKMRNMFANLHALLPQL---P-SKADKSTIVDEAVTYIKRLE 174
                              7778*********************6...3.8****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.95E-15122190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.751123173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9128174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-14128187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.24E-11128178No hitNo description
SMARTSM003531.3E-8129179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.27E-4286344No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MFKPDSGAGA SNGVLWANQS WANLSNSTDK FLLNSNSENS AGGGDEGKDK LEKEKEIIDR  60
EDQVQPELEP EAALGKKTLA KKRGGRVSGS SFKRYNGKAI KEKGKASSEE VVKEGRRGSD  120
SEDDHELHIY TERERRKKMR NMFANLHALL PQLPSKADKS TIVDEAVTYI KRLEITLQSL  180
QQQKRERMRS LPNSTMVNYN HTPILMNSQN VVYDSREGIL PSHVSSSNLV DASTTTTTTA  240
NGFNIIPDFN PLNNSFSTNS LSPEPVVFKT WTSPNVVLNM CRNEAQISVC TPKKPGIFSQ  300
ICYILENYKL VMVTAHINSD SHRSMYMIQA QPSSASDNQL LDMFPAEEIF KQAVTEINLC  360
VVSSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna24577.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309748.20.0PREDICTED: transcription factor bHLH95
TrEMBLA0A2P6PMJ10.0A0A2P6PMJ1_ROSCH; Putative transcription factor bHLH family
STRINGXP_004309748.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.14e-50bHLH family protein