PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna23617.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | Trihelix | ||||||||
Protein Properties | Length: 434aa MW: 48965 Da PI: 6.5402 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 95.6 | 4.5e-30 | 115 | 200 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+Ckek+enl k+ykk+keg+ +r ++ +++++f+ql mrna23617.1-v1.0-hybrid 115 RWPRQETLTLLEIRSSLDSKFKETNQKGPLWDEVSRIMsEEHGYQRSGKKCKEKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQL 198 8*************************************999*****************************98..55667******* PP trihelix 86 ea 87 ea mrna23617.1-v1.0-hybrid 199 EA 200 85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.713 | 108 | 173 | IPR017877 | Myb-like domain |
CDD | cd12203 | 2.56E-23 | 114 | 180 | No hit | No description |
Pfam | PF13837 | 6.0E-21 | 114 | 201 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MDDYPDLRQL MASRTQQFVQ FPDPFSVRPF NNYNPNSSVA VGQEVNTRGL FEFGSAASAP 60 PSFSTIISNT SVAANLNGST AGSSVGSLYG GLELMNHQHG WSINGNDGSA GNNSRWPRQE 120 TLTLLEIRSS LDSKFKETNQ KGPLWDEVSR IMSEEHGYQR SGKKCKEKFE NLYKYYKKTK 180 EGKAGRQDGK HYRFFRQLEA IYGDRSTNPL CSTSDQTNLT GTLNPSLLYN HTTAAINNQE 240 YQEVKLGAES LSFSNNSTDM ETSTSENNGD DLSNSANENQ RCSRGVKKTW KAHVEEFVNS 300 QMMKVMKAQE GWMEKMLKTI EGREEERFSK EEEWRKREEE RFKQQVDEFW AKERAWVETR 360 DASIMEAVGK IRGMGTNSYN NKAKDENTGG QQLMGGGLVP SSSNYMNMES SSLYIPTNEA 420 ENLWNRYGGK LSK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna23617.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004308550.1 | 0.0 | PREDICTED: trihelix transcription factor PTL-like | ||||
Swissprot | Q9LZS0 | 5e-82 | PTL_ARATH; Trihelix transcription factor PTL | ||||
TrEMBL | A0A2P6SC08 | 0.0 | A0A2P6SC08_ROSCH; Putative transcription factor MYB family | ||||
STRING | XP_004308550.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2022 | 34 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03680.1 | 4e-72 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna23617.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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