PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna22728.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ARF
Protein Properties Length: 1432aa    MW: 156459 Da    PI: 6.3042
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna22728.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.21.5e-23649750199
                              EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                              f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+
  mrna22728.1-v1.0-hybrid 649 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDS 732
                              99*****************************8544444..48******************************************** PP

                              EEEEE-SSSEE..EEEEE-S CS
                       B3  80 vvFkldgrsefelvvkvfrk 99 
                              v+F   ++++ +l+++++r+
  mrna22728.1-v1.0-hybrid 733 VLFI--WNEKNQLLLGIRRA 750
                              ****..8899999****997 PP
2Auxin_resp117.79.5e-39775858183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                              aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrW+nS+Wrs+k
  mrna22728.1-v1.0-hybrid 775 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWSNSHWRSVK 858
                              79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF530679.93E-1725144No hitNo description
CDDcd000123.14E-627215No hitNo description
PfamPF018693.5E-4627337IPR002731ATPase, BadF/BadG/BcrA/BcrD type
SuperFamilySSF530672.09E-43149341No hitNo description
SuperFamilySSF1019369.81E-49635778IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-42642764IPR015300DNA-binding pseudobarrel domain
CDDcd100172.23E-21648749No hitNo description
SMARTSM010191.8E-24649751IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548649751IPR003340B3 DNA binding domain
PfamPF023629.6E-22649750IPR003340B3 DNA binding domain
PfamPF065077.6E-34775858IPR010525Auxin response factor
SuperFamilySSF542774.32E-712901370No hitNo description
PfamPF023099.3E-612921378IPR033389AUX/IAA domain
PROSITE profilePS5174524.37312961380IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1432 aa     Download sequence    Send to blast
MKRYRNGEIW DFEQQMPLSD DACDVILGLD GGTTSTVCIC MPVLPFSDPL PDPVPVLARA  60
VAGCSNHNSV GEAAARETLE QVMAEALAKS GSNRSAVRAV CLAVSGVNHP SDQQRIMDWL  120
RDIFPRDVRL YVQNDAVAAL ACGTMGKLHG CVLIAGTGTI AYGFTEDGRN ARAAGAGPTL  180
GDWGSGYGIA AQALTAIIRA HDGRGPKTAL TSSILEKLDL SSADELIGWT YADPSWARIA  240
ALVPEVVSCA EAGDEVANKI LFDSVEELGL SVKAVVQRLD LCGPEGRDSF PLVMVGGVLE  300
ANKRWDIGTE VIRCISKEYP GAVPIRPKMP ILDTVIGFAC KSISVYSDVK EMLASDGKCP  360
SRALLLCERE KILLTACLKT LSSSDKEIRA KMAKRGNSGG QNRESGLEFG RSPQSTPNKY  420
FELLLPQAYI FHSQIGASGF HVTLTSLKLR ALPYFINSQL TFLVTVQFLR SGLFRVSAQV  480
GKGVALGVGG GLGFTAFSDA CFVQGLEFAF SGFRIRMRLS SSSSSSGFNN HQPQEGEKKC  540
LNSELWHACA GPLVSLPALG SRVVYFPQGH SEQVAASTNK EVDAHIPNYP NLPPQLICQL  600
HNVTMHADVE TDEVYAQMTL QPLSPQEQKD VYLMPAELGN PSKQPTNYFC KTLTASDTST  660
HGGFSVPRRA AEKVFPPLDY SQQPPAQELI ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV  720
FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRPQTVMPSS VLSSDSMHIG LLAAAAHAAA  780
TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF RMLFETEESS VRRYMGTITG  840
ISDLDSVRWS NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP  900
SGMPSFHALK DGDMGMNAPL MWLQGGVGDP AMQSLNFQGF GMTPWMQPRL DTSMAGLQPD  960
VYQAMAAAAL QEMRAVDAKC SSQSLLPFQQ SSNVSNGAAA MLQRQSLPQS QSQNTFLQSF  1020
QENQAPSQLL QQQLRYHPYN NDQRQQQHQQ QLHQQQQQQQ QQQLQQQQQQ LQQSQNMHQF  1080
SVQQQIPNVM SSLSNFATQS QSASLQAIPS QTQQQSFTEP VGNAISSSDV PPIHSILGSL  1140
SQDGASQLLN LTGSNSGVSS SLLPKVESQL PSGAAQCGLP QVDQLGTPQS NISELTALPP  1200
FPGREYSFQG ANDPQSNLLF GVNIDASSLM LQNGIPNLRN IGNGTDSLSM PFGASNYTTT  1260
GNDYPLNSDM TTSSCVDESG FLQSSENVDQ INPPTRTFVK VHKLGSFGRS LDISKFSSYD  1320
ELRSELGSMF GLEGQLEDPQ RSGWQLVFVD RENDVLLLGD DPWQEFVNNV WYIKILSPLE  1380
VQQMGKEGLN SVASVPSQKQ SNGNSTCDDY VSRQDMRNSS NGIASLGSLD Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-15853487943388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna22728.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304523.10.0PREDICTED: auxin response factor 6-like isoform X2
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A2P6S0I80.0A0A2P6S0I8_ROSCH; Auxin response factor
STRINGXP_004304523.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]