PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21830.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 729aa    MW: 79399.5 Da    PI: 4.9906
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21830.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.83.3e-10575616346
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              +W +++ el++++++q+G++ ++ Ia+ ++ gRt+ q+k+++ k
  mrna21830.1-v1.0-hybrid 575 KWVQQDTELFYEGIEQFGSD-FNMIAQLFP-GRTRHQIKLKFKK 616
                              8*******************.*********.**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159632.9E-26566648No hitNo description
PROSITE profilePS5129311.221571622IPR017884SANT domain
SMARTSM007172.3E-8572620IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-6574615IPR009057Homeodomain-like
SuperFamilySSF466891.94E-9574622IPR009057Homeodomain-like
CDDcd001673.62E-7575616No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MDDLDFEPTG PVRVAGRFRP KAKPKSTKAA STSAVSDLPN VGKENSNPVS STVSDTVPSA  60
TSVDVGVVNL TCLVGSSSEI SGSLEPSGNN EHLCSSVPSF DGDGIAEPST AAGDTPQPSI  120
VVVPSNVSDG SHSIFGKSAG GNADKFSGLE GLDNFHAQTT SGTEPALTKS PDKVNEGNCS  180
ARTHFPVESS AVLACDVAEA QTVSDYCATQ EPVSCTEAAM TNKHGEIRLE TKEFQILDDV  240
SDAPFTSGLR HHGKFPPKLR VKKGKNSPNI PHSEVGDMDE STLCAFLPGD VHDHISPTIG  300
DSIAPNPSPN FQANAESLAE ATQLDEAVSN GAAHSEGVCG RGHDSGNGKG STASNCPQTR  360
KYSASNREAK DGTSSRKSRK GLPHQEVDDL GNNTNEDSFN AENCSDFNGN EDREHNIERR  420
KRAPRKSKIS VSENEKPVQK RKRTKKAPDE PTEEPTEKKF SHSTRRNTRH AKKALLVIPE  480
DEIDPQKVPL KDLIRLKEYR ERVAIKEAAK LKASASHQSA YHEFQKDPSH NEEEDFGFEQ  540
DRSSGEDQAG YGDRVSTSSS SFNYQSFMNK ERPSKWVQQD TELFYEGIEQ FGSDFNMIAQ  600
LFPGRTRHQI KLKFKKEDRQ NPLRITEAFR RHSKDNSKYV LVINELQKVA REKQESNADE  660
SNDLEELELT HDNDGGVTKP ESDKIDDMKT DVAAEVQHDE ADIAEVHSPT NSDQCDNGDG  720
FGGWDDDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5n9g_C7e-1253265538159Transcription factor TFIIIB component B'' homolog
5n9g_H7e-1253265538159Transcription factor TFIIIB component B'' homolog
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1438445QKRKRTKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21830.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292009.10.0PREDICTED: transcription factor TFIIIB component B'' homolog
TrEMBLA0A2P6PPK10.0A0A2P6PPK1_ROSCH; Putative transcription factor MYB/SANT family
STRINGXP_004292009.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36662938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.13e-37MYB_related family protein