PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna21829.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 733aa MW: 79946.3 Da PI: 4.9501 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.1 | 8.2e-08 | 561 | 602 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W++++ e++++a+k +G + + Ia ++ gRt+ q+k++++k mrna21829.1-v1.0-hybrid 561 KWSKQDTEIFYEAIKPFGFD-SSIIALLFP-GRTPRQIKLKLNK 602 7*******************.*********.***********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15963 | 1.3E-18 | 552 | 632 | No hit | No description |
SMART | SM00717 | 6.3E-6 | 558 | 606 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.10E-5 | 561 | 604 | No hit | No description |
SuperFamily | SSF46689 | 1.05E-5 | 562 | 608 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 733 aa Download sequence Send to blast |
MDDLLDFEPT GPVRVAGRFR PKAKSRSTKV TSTAAASNVV TESSIPVSST VSDTIPSATS 60 IDVGEVKVTS LVGSSSEILG SLELSGNEHL CSRVQSFDGD RTTKVSESAA PHSLQPSLMV 120 AAFNGSHLAG KNADIFSGLE CLDDFLTQTT SGTVPASRKS PDKFNGQKCD APTHCSVESS 180 ALACDVAQTQ TISDYCATKG PLSCTEASMS NEHGEIRLET QEFETVDAVS DAPISTGCRT 240 GKFPPKLSVK KGKENPNIPH SGVEQSTVSP AAKFKTGEMD ERSVFVNSSG DVAYHISLTF 300 GDSIAPNPTP YFQENAESLT KLGDAVFGDA TLSKGVCGKG HRSGNEKAYT VSSPPQKRKV 360 SAADEEAKDG TSSRKSRKQL PRRHVEELGN NTYEDSFDAE NCSDCDGNAD RSDHNTEHRK 420 RAPRQSKIPA SENEKTVQKR KRTKKAPDEP TEELTEKKSS HSTLDKSLVE IPEDEIDLQK 480 VPIKDIIRLN DTDTDSLPCY SLPLMQIKEA AKLKTPASNK SANDECHKEA CHNEVGDRDR 540 VSTSSPSLNY HSFMNKERPI KWSKQDTEIF YEAIKPFGFD SSIIALLFPG RTPRQIKLKL 600 NKEKRRNPKR TDEACHCDSK DYSKYDLVIN VARERQELDA DESSDIADQE EVELTHDHNE 660 GMTKPEFDEI HDMETDIAAE VQHKEAAVAE GHSPIISDQN DDVDGFGGWD DDIFQPQSTL 720 PSALINEVVV VA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 437 | 444 | QKRKRTKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna21829.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011459638.1 | 0.0 | PREDICTED: uncharacterized protein LOC105350014 | ||||
TrEMBL | A0A2P6PPK1 | 0.0 | A0A2P6PPK1_ROSCH; Putative transcription factor MYB/SANT family | ||||
STRING | XP_004292009.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3666 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.1 | 2e-27 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna21829.1-v1.0-hybrid |