PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna18656.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HD-ZIP
Protein Properties Length: 243aa    MW: 27911.7 Da    PI: 4.6199
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna18656.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.9e-193993256
                             T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                              ++ +f++eq++ Le+ Fe+++ +  +++ +LAk+lgL+ rqV +WFqN+Ra++k
  mrna18656.1-v1.0-hybrid 39 NNKKRFSDEQIRSLESIFESESRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWK 93
                             56788*************************************************9 PP
2HD-ZIP_I/II122.52e-3940131293
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              +k+r+s+eq+++LE+ Fe+e++Lep++K +la+eLglqprqva+WFqn+RAR+k+kqlE+dy+ L+++y++l+++ e+L+ke+++L
  mrna18656.1-v1.0-hybrid  40 NKKRFSDEQIRSLESIFESESRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYSILRANYNNLASKFETLKKEKQAL 125
                              79************************************************************************************ PP

              HD-ZIP_I/II  88 reelke 93 
                               ++l++
  mrna18656.1-v1.0-hybrid 126 VTQLQK 131
                              **9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.59E-191997IPR009057Homeodomain-like
PROSITE profilePS5007118.0743595IPR001356Homeobox domain
SMARTSM003893.0E-173799IPR001356Homeobox domain
PfamPF000461.6E-163993IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-1941102IPR009057Homeodomain-like
CDDcd000861.78E-154396No hitNo description
PRINTSPR000318.9E-66675IPR000047Helix-turn-helix motif
PROSITE patternPS0002707093IPR017970Homeobox, conserved site
PRINTSPR000318.9E-67591IPR000047Helix-turn-helix motif
PfamPF021835.1E-1695137IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MFESDQVEYS PSPEEAEALS YMNDSLGAGS GFKKKSSKNN KKRFSDEQIR SLESIFESES  60
RLEPRKKLQL AKELGLQPRQ VAIWFQNKRA RWKSKQLERD YSILRANYNN LASKFETLKK  120
EKQALVTQLQ KLNDMKQRPK EERNNIIDGE SDNGDDAARS ESEGKPNYQM SLEKSEQGLG  180
VMSDDDSSIK AEYFGLEEDP NLVNFVESAD GSLTSPEDWG RLNSDGGLFD QSTSDYQWWN  240
FWS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna18656.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7295110.0KF729511.1 Rosa hybrid cultivar homeobox-leucine zipper protein 1 (HB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306630.11e-176PREDICTED: homeobox-leucine zipper protein ATHB-12-like
SwissprotP468972e-72ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A2P6SIR71e-150A0A2P6SIR7_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004306630.11e-175(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.16e-71homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]