PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna17966.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HD-ZIP
Protein Properties Length: 343aa    MW: 38010.8 Da    PI: 8.5934
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna17966.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.7e-18170224256
                              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              rk+ +++k+q   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  mrna17966.1-v1.0-hybrid 170 RKKLRLSKDQSAFLEESFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTK 224
                              678899***********************************************98 PP
2HD-ZIP_I/II127.75e-41170260192
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +e
  mrna17966.1-v1.0-hybrid 170 RKKLRLSKDQSAFLEESFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQE 255
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreelk 92 
                              Lr +lk
  mrna17966.1-v1.0-hybrid 256 LR-ALK 260
                              *9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046186.6E-927134IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.7E-17154220IPR009057Homeodomain-like
SuperFamilySSF466894.71E-18161227IPR009057Homeodomain-like
PROSITE profilePS5007117.086166226IPR001356Homeobox domain
SMARTSM003892.6E-16168230IPR001356Homeobox domain
CDDcd000866.39E-16170227No hitNo description
PfamPF000461.8E-15170224IPR001356Homeobox domain
PROSITE patternPS000270201224IPR017970Homeobox, conserved site
PfamPF021836.9E-11226260IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.5E-26226269IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MELALSLGDA PKQFLFLDKA PSVGSSKDLG FCMALGSREG YDQEDESNRR RRRVSSDPPI  60
QLNLLPSVPV MKTPSQLRFP WLTDNLAVSE PAGLDEPGKG LDVNRFPLVA GNAEEAEDAA  120
AQLSSPNSTV SSFQMDFGVR RSKRDLDLEV LETERASSRA SDDDENGSTR KKLRLSKDQS  180
AFLEESFKEH STLNPKQKIA LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV DCEYLKRCCE  240
TLTEENRRLQ KELQELRALK TSQPFYMQLP ATTLTMCPSC ERVVTTASAT TATTNATPNT  300
TTIKSSTPSG LTSNHSRLHS HSPFAKAQAH MQPQVQANKG AA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168174TRKKLRL
2218226RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna17966.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM2629445e-82AM262944.1 Phillyrea latifolia partial mRNA for type II homeodomain-leucine zipper protein precursor (ophh-61B gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303339.10.0PREDICTED: homeobox-leucine zipper protein HOX11
SwissprotP466651e-106HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A2P6RDF00.0A0A2P6RDF0_ROSCH; Putative transcription factor HD-ZIP family
STRINGXP_004303339.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23353382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-105homeobox from Arabidopsis thaliana