PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna16489.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 187aa    MW: 21539.6 Da    PI: 9.4558
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna16489.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF313.3e-10957149
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             k+i n    +vt +kRr+g++ KA+  +  ++a++a+i fs+  + +++
  mrna16489.1-v1.0-hybrid  9 KKITNRNALKVTCTKRRTGLIRKAKDFCAKTGAQIAIITFSPGMQPKTF 57
                             678999999********************************97666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-17160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.899161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-19275IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-8323IPR002100Transcription factor, MADS-box
PfamPF003199.6E-141057IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MGRKKIEIKK ITNRNALKVT CTKRRTGLIR KAKDFCAKTG AQIAIITFSP GMQPKTFGNP  60
SVESVIDRYE LYEKKSSNDK EMLDEDRGLR EVGLSDEENE MLEGMTLNEL KQYARSIEEQ  120
TNKFRMAWQI QDRKRRESST VDLFEKNACG DLTIFGVKVG EKNQKMETED MKRRESCTKD  180
FLSTFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131136DRKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna16489.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465921.11e-135PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A2P6R6935e-88A0A2P6R693_ROSCH; Putative transcription factor MADS-type1 family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-20AGAMOUS-like 62