PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna16221.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 336aa    MW: 37562.9 Da    PI: 6.6789
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna16221.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52.1e-12124175155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +r +h ++Er+RR+ +N+ ++ Lr+++P +   +s++ + a+i   A++++k+L+
  mrna16221.1-v1.0-hybrid 124 QRITHIAVERNRRKLMNDYLSVLRSMMPAS---YSQRGDQASIIGGAINFVKELE 175
                              799***************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.60E-13122179No hitNo description
Gene3DG3DSA:4.10.280.105.2E-13122179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-16123190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.659123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-10124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-9129180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MALESVVFQS DPSSYGNFLG GSRSWDHGFG FGGDDDHHQE EGYAQHDMVS NGNTVGQGLM  60
GYCTPSPVVK QSVYNDNSNS NSKPETCTDN FNSHNSFSSP IAVAGRRKRR RTRNIKNKEE  120
VESQRITHIA VERNRRKLMN DYLSVLRSMM PASYSQRGDQ ASIIGGAINF VKELEQLLQS  180
LEASRRTNQQ SDLDLASIFS SFFTFPQYST CSNKNTHGHG HSEYMNNNLV HPHEITGDKQ  240
SGAIADVEVT MVESHANIKV LLKRHPRQLL KMVLGLHSLR LVILHLNVTS MDSMILYSFS  300
VKVEDNSQLT SMNEIAADVY EMVGRIQEEA EFLPQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106110RKRRR
2106111RKRRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna16221.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288157.10.0PREDICTED: transcription factor bHLH94-like
TrEMBLA0A2P6RQA80.0A0A2P6RQA8_ROSCH; Putative transcription factor bHLH family
STRINGXP_004288157.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-64bHLH family protein