PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna12474.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | GRF | ||||||||
Protein Properties | Length: 378aa MW: 42500.9 Da PI: 8.8106 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.3 | 3e-24 | 80 | 123 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e mrna12474.1-v1.0-hybrid 80 DPEPGRCRRTDGKKWRCSKEAYADSKYCERHMHRGKNRSRKPVE 123 79***************************************987 PP | |||||||
2 | QLQ | 61.5 | 2.3e-21 | 14 | 49 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+q+L++Q+l+yKy++++ P+Pp+Ll+ i++ mrna12474.1-v1.0-hybrid 14 PFTPSQWQELEHQALIYKYMVSGIPIPPDLLFSIKR 49 8*******************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.3E-13 | 13 | 49 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 7.6E-16 | 14 | 47 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.503 | 14 | 49 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.312 | 80 | 124 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.6E-20 | 81 | 123 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MMSSSSAGRG MRFPFTPSQW QELEHQALIY KYMVSGIPIP PDLLFSIKRS CLDSPPLSSK 60 LFSPHIGWNC FQMGLGRKID PEPGRCRRTD GKKWRCSKEA YADSKYCERH MHRGKNRSRK 120 PVEVFKATLP TSANSNSNSN SNTSPITKIF NPSSNSLSTP FHSLSSLSPN ESSYNSSSSN 180 LDDHPFLYSR PNIGLSQQER STSLFLDSAS YNNPLHPNLE YRPNRFGYGV KEEVDEHAFF 240 SEPSGSVRGF SGSSSSLNHH QNESNWQLTM SCSDSSSKQR TCSALQTEHY PHLQLQNFTD 300 SKRGEETQRT IHHFFDEGPP KDRESSWLDL DANNKSSNSG SASTTRLSIS IPNSAHDFPI 360 YNSRSHHGNY FLPLRLN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna12474.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM443008 | 4e-52 | AM443008.2 Vitis vinifera contig VV78X166267.15, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004287622.1 | 0.0 | PREDICTED: growth-regulating factor 1 isoform X1 | ||||
TrEMBL | A0A2P6RKI7 | 0.0 | A0A2P6RKI7_ROSCH; Putative transcription factor interactor and regulator C3H-WRC/GRF family | ||||
STRING | XP_004287622.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4043 | 34 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 8e-55 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | mrna12474.1-v1.0-hybrid |