PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna10867.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 289aa MW: 32139.2 Da PI: 9.3368 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00075 | 22 | 44 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ Fs+ L H+ H mrna10867.1-v1.0-hybrid 22 YTCRLCSRAFSSTQALGGHQTAH 44 9***************9999877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.72E-6 | 21 | 49 | No hit | No description |
PROSITE profile | PS50157 | 12.237 | 22 | 49 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.1E-4 | 22 | 48 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.1E-6 | 22 | 47 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 24 | 44 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MGDPLIAAPM RRSIESFSFN LYTCRLCSRA FSSTQALGGH QTAHRKEKSE RLIRLIRQAE 60 LDELKYAADN DVVLSPEPIS WAPPATDDQT IKVYDFMPMG DGTSPVPGSG SENKKKQKKR 120 KFMNLSGCSK VNNEASDADQ KKQKKRKYSQ KFSECPENKA ADADKTEKKR KYSTKLSDCS 180 ENKASELEQK KQKSTKSSEC PEHKASNTER KKKKLKYMKL LSECSEINRG SDLSGCSNNK 240 ASDPDQNKSQ FTKLMPSPEL TLATGAAPDV LVQVFSTDSN ESGCTEYF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna10867.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011465813.1 | 4e-31 | PREDICTED: nucleolar protein 58-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF26223 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05120.1 | 5e-08 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna10867.1-v1.0-hybrid |