PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna08999.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 845aa MW: 92980.5 Da PI: 6.2974 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.7 | 4.7e-19 | 25 | 83 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ mrna08999.1-v1.0-hybrid 25 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 83 5679*****************************************************97 PP | |||||||
2 | START | 179.8 | 1.6e-56 | 169 | 377 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECT CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetleviss 87 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++++++l+v+s+ mrna08999.1-v1.0-hybrid 169 IAEETLAEFLSKATGTAVEWVQLPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVSEILKDRPSWFRNCRSVDVLNVLST 253 7899******************************************************.9999999999***************** PP T..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEE CS START 88 g..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwv 167 g g+++l +++l+a+++l+p Rdf+ +Ry+ l++g++v++++S++++q+ p+ +++vRae+lpSg+li+p+++g+s +++v mrna08999.1-v1.0-hybrid 254 GngGTIELLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSmppVQNFVRAEMLPSGYLIRPCEGGGSIIHIV 339 ****************************************************9988899*************************** PP E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 +h+dl+ + ++++lr+l++s++ ++kt++a+l+++++ mrna08999.1-v1.0-hybrid 340 DHMDLEPWNVPEVLRPLYESSTLLAQKTTMAALRNLRQ 377 **********************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.92 | 20 | 84 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-16 | 22 | 88 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.72E-17 | 24 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.70E-17 | 25 | 85 | No hit | No description |
Pfam | PF00046 | 1.1E-16 | 26 | 83 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-18 | 27 | 83 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.78E-6 | 77 | 116 | No hit | No description |
PROSITE profile | PS50848 | 26.392 | 159 | 387 | IPR002913 | START domain |
CDD | cd08875 | 3.95E-80 | 163 | 378 | No hit | No description |
SuperFamily | SSF55961 | 1.79E-39 | 168 | 380 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 3.7E-24 | 168 | 375 | IPR023393 | START-like domain |
SMART | SM00234 | 1.2E-42 | 168 | 378 | IPR002913 | START domain |
Pfam | PF01852 | 4.1E-54 | 169 | 377 | IPR002913 | START domain |
Pfam | PF08670 | 5.8E-51 | 703 | 843 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0045597 | Biological Process | positive regulation of cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 845 aa Download sequence Send to blast |
MAVTSSSSCK ELSGGGMKMQ MDNGKYVRYT PEQVEALERL YHECPKPSSM RRQQLIRECP 60 ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSHLVY 120 ENSYFRQQTQ NTTLATTDTS CESVVTSGQH HLTPQHPPRD ASPAGLLSIA EETLAEFLSK 180 ATGTAVEWVQ LPGMKPGPDS IGIVAISHGC TGVAARACGL VGLEPTRVSE ILKDRPSWFR 240 NCRSVDVLNV LSTGNGGTIE LLYMQLYAPT TLAPARDFWL LRYTSVLEDG SLVVCERSLN 300 NTQNGPSMPP VQNFVRAEML PSGYLIRPCE GGGSIIHIVD HMDLEPWNVP EVLRPLYESS 360 TLLAQKTTMA ALRNLRQISQ EVSQPNTNGW GRRPAALRAL SQRLSKGFNE AVNGFTDEGW 420 SILESDGVDD VTLLVNSSPG KMMGANLYAN GVPSMSNAVL CAKASMLLQN VPPAILLRFL 480 REHRSEWADR SIDAYSAAAI KAGPCGMIGS RAGSFGDQVI LPLAHTIEHE EFMEVIKIEN 540 MGHYRDDMMM PAADIFLLQL CSGVDENAVG TCAELVFAPI DASFSDDAPI LPSGFRIIPL 600 DSHMDAPSPN RTLDLASALE VGPTGNRSSG DIAGHCGSTK SVMTIAFQFA FEIHLQDNVA 660 SMARQYIRSI IASVQRVALA LSPSRFGSHA GFRPPPGTPE AQTLAGWICQ SYRCYLGVEL 720 LKSEGSESIL KSLWHHSDAI LCCSLKALPV FTFANQAGLD MLETTLVALQ DITLEKIFDD 780 NGRKILFTEF PQIMQQGFMC LQGGICMSSM GRPISYERAV AWKVLNEEET AHCICFMFIN 840 WSFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna08999.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ712870 | 0.0 | JQ712870.1 Prunus persica cultivar Liangji class III HD-Zip protein 8 (ATHB8) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004291167.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-8 | ||||
Swissprot | Q39123 | 0.0 | ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8 | ||||
TrEMBL | A0A2P6Q043 | 0.0 | A0A2P6Q043_ROSCH; Putative transcription factor & lipid binding Homobox-WOX family | ||||
STRING | XP_004291167.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1946 | 33 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32880.1 | 0.0 | homeobox gene 8 |
Link Out ? help Back to Top | |
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Phytozome | mrna08999.1-v1.0-hybrid |