PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna05169.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 158aa    MW: 17463.5 Da    PI: 6.5045
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna05169.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.3e-064264123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C++Cg+ F ++  L  H++ H
  mrna05169.1-v1.0-hybrid 42 FVCHYCGREFENSQALGGHQNAH 64
                             89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.7E-53868IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.08E-73869No hitNo description
PROSITE profilePS5015712.1334269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MSASVADQNT KPSSSAIKLF GFSLMADPCE DGVVTTKSKK QFVCHYCGRE FENSQALGGH  60
QNAHKRERKL ARMAMLEHEE DHQYQECQHF LPPQRSQVLF PTGVRYPSIN PMFDTKSGES  120
ATQNYIGGGA GAGADRVLLP NDYEGNDQVD IDLRLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna05169.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004296255.11e-117PREDICTED: uncharacterized protein LOC101292396
TrEMBLA0A2P6QYU54e-69A0A2P6QYU5_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004296255.11e-116(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39032449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.14e-13zinc finger protein 4