PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna01098.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 326aa MW: 35481.5 Da PI: 7.5598 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00076 | 115 | 137 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H mrna01098.1-v1.0-hybrid 115 YECKTCNRTFPSFQALGGHRASH 137 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 13.5 | 0.00021 | 211 | 233 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H mrna01098.1-v1.0-hybrid 211 HECSICGSEFSSGQALGGHMRRH 233 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.0E-13 | 114 | 139 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.23E-8 | 114 | 137 | No hit | No description |
PROSITE profile | PS50157 | 10.658 | 115 | 142 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.052 | 115 | 137 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 117 | 137 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.23E-8 | 206 | 233 | No hit | No description |
PROSITE profile | PS50157 | 9.764 | 211 | 233 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.0E-11 | 211 | 235 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.02 | 211 | 233 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 213 | 233 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MEGQEEVQAV LSDHQQSQMM IIKGKRTKRQ RPMSPFGLAV TSSSSSACGG GHGGEEYGNS 60 FTSASYESTE EEEDMANCLI LLAQGCDVVP KQQTSPVHEA TGVSGHVSKA GFYVYECKTC 120 NRTFPSFQAL GGHRASHKKP KSVAAAMADQ EKKPAPIHFT TSASMDQEVE DSKQFVKKSS 180 PPPPPPPPPS TQPAVPIQIK GFQSNNKAKI HECSICGSEF SSGQALGGHM RRHRAIVANN 240 NTTTQVVGIG AAIDNNSTRS KQERSNILAL DLNLPAPEDH DHHHHHHHHH QQHQIHHQRD 300 SKFQFVPTQQ TSLVFNAPAL VDCHY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna01098.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU815856 | 3e-89 | GU815856.1 Fragaria x ananassa clone ChFaM130 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004294532.1 | 0.0 | PREDICTED: zinc finger protein ZAT5-like | ||||
TrEMBL | A0A2P6QGP9 | 1e-170 | A0A2P6QGP9_ROSCH; Putative transcription factor C2H2 family | ||||
STRING | XP_004294532.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 2e-50 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna01098.1-v1.0-hybrid |