PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_68.g369.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family CO-like
Protein Properties Length: 333aa    MW: 38196.6 Da    PI: 4.497
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_68.g369.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box31.73.1e-10344541
                             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvp 41
                                         +C+++e+ +++ +C +++ +lC+ C +e+H +     H +++
  model.Picochlorum_contig_68.g369.t1  3 MCAKCEDSRATMYCVNDDAYLCQVCDEEHHANplgakHVRQK 44
                                         8******99*******************99778888886665 PP
2CCT65.71.3e-22265308144
                                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                          Re+++ RY+ Kr +R+F+K+irY+sRKa+Ae RpR+KGrFv+++
  model.Picochlorum_contig_68.g369.t1 265 REERVARYRAKRARRCFQKTIRYQSRKAYAEIRPRIKGRFVSHE 308
                                          9****************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.836145IPR000315B-box-type zinc finger
CDDcd000219.70E-7245No hitNo description
SuperFamilySSF578459.62E-5249No hitNo description
PfamPF006436.4E-8344IPR000315B-box-type zinc finger
SMARTSM003362.2E-6345IPR000315B-box-type zinc finger
PROSITE profilePS5101714.882265307IPR010402CCT domain
PfamPF062035.7E-18265307IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MIMCAKCEDS RATMYCVNDD AYLCQVCDEE HHANPLGAKH VRQKIDTVYK TQVSGTSFDD  60
VAVVPQLGGQ DDLFSSDVFF PEVDMPVSMK TEDLGQFDDL FSCLPDDAAF GVVPQATDMV  120
PQAPNMVPQD NVFIKSSKMN QHDVMPEMNE EHVMVPQMVP CLEGEVEPLA FIDVDAPVVE  180
EKQEEEMRGE KRRRAVQGAY IDDDDFEYSS FLEDEEDDND DADFYVTPRR VGSRSRRLTR  240
RTMANHHNAQ QHISAHMVEE PELTREERVA RYRAKRARRC FQKTIRYQSR KAYAEIRPRI  300
KGRFVSHEEY AEYMAQKQEE EQQQEAVVPG SC*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP6111112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.12e-08CONSTANS-like 2