PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_45.g400.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family MYB_related
Protein Properties Length: 457aa    MW: 51271.6 Da    PI: 10.2882
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_45.g400.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding331.3e-10373415246
                                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                          +rW+ e+ el+ +a  q+G++ +++Ia+ ++ gR +k++k ++ k
  model.Picochlorum_contig_45.g400.t1 373 DRWSVEDTELFFRALSQFGTD-FTLIAQLFP-GRQRKHLKKKFCK 415
                                          69*******************.*********.*********9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.1E-24365445No hitNo description
SuperFamilySSF466898.58E-9368415IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-5370414IPR009057Homeodomain-like
SMARTSM007171.1E-4371419IPR001005SANT/Myb domain
CDDcd001671.47E-4374415No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MNFFDLSELD KLSDTKKKGG QLRRSIPNVL AKAKPKAGGA DKGGAVTRER KANVQEHGVR  60
DSGTANEEVP SSSARCEEKV PIIHDKKTKE KGEVFIPSQH TELLESLSTP GRRSGRTDAE  120
KQKKKVAKRK EEAGKGLEEL HRAAHLSHYE GADDISKVIK AEPLEERKQR ILAQNLVRKK  180
RGRPRKSDAS DNKKKRMTKD SSVSSQQDQE LGPDQELGDS RDGEEDTQKS MGRQSSSATV  240
RRNQKDALVK VEDEDQDDAT QKKQTHDTLA DKKLDAENWS LKDIVKWGNA RERRLAKEHA  300
KTKPAQPSPP PEPIQEKEPQ HLHPKVTVKD GKVVVDKASL TVAAQQKEQY TKVVTEDTHR  360
VNSMSYVNRL SNDRWSVEDT ELFFRALSQF GTDFTLIAQL FPGRQRKHLK KKFCKEGKHN  420
AARIDEAMKA SAHATISSYR DMIRLLRESG MNVGSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5n9g_C8e-1432242923136Transcription factor TFIIIB component B'' homolog
5n9g_H8e-1432242923136Transcription factor TFIIIB component B'' homolog
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178195KKRGRPRKSDASDNKKKR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP377099
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-15MYB_related family protein