PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_43.g381.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family C3H
Protein Properties Length: 347aa    MW: 37077.2 Da    PI: 7.836
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_43.g381.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH45.51.3e-1475100126
                                          --S---SGGGGTS--TTTTT-SS-SS CS
                              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                          yktelCr + ++GtC+yG +C+FaH+
  model.Picochlorum_contig_43.g381.t1  75 YKTELCRSWEEFGTCRYGTKCQFAHS 100
                                          9************************8 PP
2zf-CCCH44.62.4e-14113137125
                                          --S---SGGGGTS--TTTTT-SS-S CS
                              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                                          ykte Cr+fa tGtC+yG rC+F+H
  model.Picochlorum_contig_43.g381.t1 113 YKTEVCRTFATTGTCPYGTRCRFIH 137
                                          9************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.9E-1970107IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-1072106IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.60574102IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-974101IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-1175100IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-15108138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-9109138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.45112140IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-9112139IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-11113137IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MTQQQRSSGT KLVPPPRDFV PQGELALRYQ DKNKIQQSLL ENNSEEEDST QTGMSQHRQG  60
SGGAQQSSAS QNPLYKTELC RSWEEFGTCR YGTKCQFAHS LEELRPVQRH PKYKTEVCRT  120
FATTGTCPYG TRCRFIHQST ALAQLRTAKA TPSMPQEPQV MLDSKPQMIP GGGLDNNPAS  180
FANVARGASK KMAQRAHPVG SAASSQLSGS SNSLMGGPDY ATVTSRGGGG ASFPQESPPS  240
LIQHTEYETA LTAALDVLHC NDDEGPFQLG NQQLMGSTDA LQPSFSGDSI SGHGSLPTGI  300
LPRSTSLVSG SPNEAGSMPT SPHMHPQQAS AQGARRLPVF SNLVEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-2875139468Butyrate response factor 2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP36231314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-25C3H family protein