 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
model.Picochlorum_contig_29.g48.t1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
|
| Family |
LSD |
| Protein Properties |
Length: 170aa MW: 17827.1 Da PI: 7.762 |
| Description |
LSD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| model.Picochlorum_contig_29.g48.t1 | genome | Rutgers | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-LSD1 | 42.8 | 8.8e-14 | 19 | 43 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+gCrt+L+YP GA +VRCa C ++
model.Picochlorum_contig_29.g48.t1 19 CQGCRTMLMYPSGAQNVRCARCSHI 43
**********************996 PP
|
| 2 | zf-LSD1 | 33.4 | 7.3e-11 | 58 | 83 | 1 | 25 |
zf-LSD1 1 Cg.gCrtlLsYPrGApsVRCalCdtV 25
C+ +Cr+ L+YPrGA+ V+C+lC t+
model.Picochlorum_contig_29.g48.t1 58 CSpNCRVQLMYPRGATQVQCSLCGTM 83
6679*******************996 PP
|
| 3 | zf-LSD1 | 40 | 6.6e-13 | 97 | 121 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C gC+++L+Y +GA+sV+Ca+C+ V
model.Picochlorum_contig_29.g48.t1 97 CDGCQVTLMYAYGARSVKCAVCNVV 121
***********************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009814 | Biological Process | defense response, incompatible interaction |
| GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response |
| GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response |
| GO:0045595 | Biological Process | regulation of cell differentiation |
| GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
| Sequence ? help Back to Top |
| Protein Sequence Length: 170 aa
Download sequence Send
to blast |
MSTQPSRPSG SVQQSQLMCQ GCRTMLMYPS GAQNVRCARC SHINPVSQSS DMAQLSCCSP 60
NCRVQLMYPR GATQVQCSLC GTMNDAQQAN QLGHVLCDGC QVTLMYAYGA RSVKCAVCNV 120
VTPVNSETAV GGGSAMSGGG SQQQQQQEQH ATVVVENPSG TQLGVKNDQ*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
