PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_168.g868.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family AP2
Protein Properties Length: 706aa    MW: 78256.1 Da    PI: 6.9315
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_168.g868.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.34.3e-1476127154
                                   AP2   1 sgykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkle 54 
                                           s+y+GV++d+k+ +W+++I++        +  +s+g+f+t+e Aa+a+++a+  l 
  model.Picochlorum_contig_168.g868.t1  76 SRYRGVSYDRKKAKWRVQIKV----AalGKSGVSVGYFDTEEAAARAYDRAAIGLL 127
                                           79*******************....44446*********************98766 PP
2AP228.24.8e-09183232155
                                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                           s+y GV    ++++W A+I +       k  +lg++ t+eeAak +++  ++l+g
  model.Picochlorum_contig_168.g868.t1 183 SKYMGVGSSNRKNQWQARILVH-----GKVTHLGYYETEEEAAKVYDRVSLALHG 232
                                           79****778889*********4.....4********************9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-976124IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-1176140IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.9E-1277139IPR001471AP2/ERF domain
SMARTSM003806.0E-1077145IPR001471AP2/ERF domain
PROSITE profilePS5103214.98777139IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-12183241IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.6E-10184240IPR001471AP2/ERF domain
PROSITE profilePS5103212.866184240IPR001471AP2/ERF domain
SMARTSM003803.1E-6184246IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-7273330IPR016177DNA-binding domain
CDDcd000183.13E-10273331No hitNo description
PROSITE profilePS5103212.233274330IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-7274331IPR001471AP2/ERF domain
SMARTSM003801.7E-4274336IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MKTEGYSATN GAEQMLFHPL EKRGGGQGQH GLACKTAESP SDEKPSSSLS EANTSAGGLG  60
SDGSPQARSH APVNKSRYRG VSYDRKKAKW RVQIKVAALG KSGVSVGYFD TEEAAARAYD  120
RAAIGLLGRD APNLQTNFDV SDYSEDSIPC LSGKTREEVK TTLKSERIKQ APRRRFMSRQ  180
RTSKYMGVGS SNRKNQWQAR ILVHGKVTHL GYYETEEEAA KVYDRVSLAL HGMQAQTNFP  240
VDDYPEQDIE PFRDLDRESL QRALGVKPMD KSSKYRGVSK KKGKWEAKVM VNRRWAYREL  300
FDSEEAAARA YDKALWRLKP AEAQSYVNFK DEAPNGVKVG VRQSIVEDMS MDDGRFGECN  360
EVDSDDDFEY EYRPTKGTSR SEKMRAKKNM SGTHVDHNHH SAARAKAAPN ERHRQHGRPQ  420
FSITPGEGLK FTSGSIESDV TPVGMIPNQQ QGSFDEPLLI RVGSESHILA PDHHMNAGSS  480
TDLVTKRHSG MKRVTSEPQF SHVPFNGEPL GQMAVPGTYE EIHDFMHEKD IFGGVDLGEL  540
TGSLGQPEDH DLQHIHDFVT TSGVDMHGGS SELMFEDDEE MALTNLEQNA RPRKLNKSIS  600
MQNLSCVDIS DASNVTTANK PPLPGTMVGR MATLQTTDRN LPPKPVLRRI NTYTSALPSL  660
EEEYNLARSH NSSDEDLVKK LWGAAPAIIG MPNTHSDDVR AFDHT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17486KSRYRGVSYDRKK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP624466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.22e-16AP2 family protein