PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold25805-snap-gene-0.3-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | DBB | ||||||||
Protein Properties | Length: 207aa MW: 22818.3 Da PI: 4.681 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20 | 1.4e-06 | 3 | 46 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 +C+ +e+ e++ C ++ lC++C + H H++v maker-scaffold25805-snap-gene-0.3-mRNA-1 3 IRCDVCEKVEAEVLCCADEAVLCRECDGKVHAAnklsqkHERVL 46 58******99*******************9*6677888888765 PP | |||||||
2 | zf-B_box | 27.2 | 8.1e-09 | 62 | 99 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..H 37 + + C++++e lfC +++ lC +C +++H g H maker-scaffold25805-snap-gene-0.3-mRNA-1 62 QLPPCDLCQERIGYLFCLEDRASLCTNCDVSTHMGslH 99 6789******9999******************976673 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.385 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.18E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 1.2E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.5E-6 | 61 | 108 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.1E-5 | 63 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.60E-6 | 64 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MKIRCDVCEK VEAEVLCCAD EAVLCRECDG KVHAANKLSQ KHERVLLKQP SSSSSFSSSN 60 VQLPPCDLCQ ERIGYLFCLE DRASLCTNCD VSTHMGSLHA SSHQRFLNSG IHVALHSSID 120 NNINTGFNSR NSSLPMPETS FNFLDDNESR TAMTMEVEAG STETRATFSG ETQLATEPSW 180 SLDEIFDPNN LNYYDFSGVG SSRISSQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018834173.1 | 5e-83 | PREDICTED: B-box zinc finger protein 23 | ||||
TrEMBL | A0A2N9J858 | 1e-115 | A0A2N9J858_FAGSY; Uncharacterized protein | ||||
STRING | VIT_18s0089g01280.t01 | 4e-77 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18377 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 2e-40 | light-regulated zinc finger protein 1 |