PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold09972-augustus-gene-0.4-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 415aa    MW: 46210.4 Da    PI: 8.2341
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold09972-augustus-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.3e-11343388655
                                                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                   +++Er RR ri +++ +L+el P+     +k  + a++L +AveYIk+Lq
  maker-scaffold09972-augustus-gene-0.4-mRNA-1 343 SIAERVRRTRISERMRKLQELFPNM----DKQTNTADMLDLAVEYIKDLQ 388
                                                   689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.437337387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-15340401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.47E-11341392No hitNo description
Gene3DG3DSA:4.10.280.104.5E-14342400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-11343393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-8343388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MSLLYSPTFK YSDVQLKKNH LDFMDSNTYH HPQQELQQQH QHQLQQQHQH NSGLMRYRSA  60
PSSVFANLLD GNINGGEGGV GCEDYRDLRS SNPEVETMLA RFMTPCNGSG DSNSQMVYQA  120
QAAQQVQALP NHNSVGPGTT LDSSFSGLNS VGIENSMQAK MGSGNRSNLV RQSSSPSLFS  180
DLTMDNGFAV MRDVGTFRAC NGTNGEASPS MTKLNDHLSF TARRLPQIAE IGNEITSPED  240
QSLGNANGSN QQYIPKFTSD SWDESTLNSL RRARDNEVNM FPTSNALETQ NADSGNHTHR  300
LTHHLSLPKT SVEMATIEKF LQFQGSVPCK IRAKRGCATH PRSIAERVRR TRISERMRKL  360
QELFPNMDKQ TNTADMLDLA VEYIKDLQKQ VKTLTDTKAK CSCSRKQKQC SNHSA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023903400.10.0transcription factor bHLH130-like isoform X2
RefseqXP_023903401.10.0transcription factor bHLH130-like isoform X2
RefseqXP_023903402.10.0transcription factor bHLH130-like isoform X2
RefseqXP_023903403.10.0transcription factor bHLH130-like isoform X2
TrEMBLA0A2N9FJL30.0A0A2N9FJL3_FAGSY; Uncharacterized protein
STRINGPOPTR_0009s06910.11e-162(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40053359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.17e-71bHLH family protein