PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold08667-augustus-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family G2-like
Protein Properties Length: 464aa    MW: 50902.4 Da    PI: 7.499
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold08667-augustus-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.46e-32249304156
                                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                                                   k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  maker-scaffold08667-augustus-gene-0.5-mRNA-1 249 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 304
                                                   68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.355246306IPR017930Myb domain
SuperFamilySSF466895.38E-17246307IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-28247307IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-26249304IPR006447Myb domain, plants
PfamPF002498.1E-7251302IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MASPSELSLD CKPRSYSTLL KSFGDQNDQT QKLEDYLSRL EEERLKIDAF KRELPLCMQL  60
LTNAVEEYRQ RLQAYRANQG PRPVLEEFIP LKHSASEISE KSPNNSDKAS WMETAQLWSQ  120
ASDGTKPQST IISPKEPDIG FNVSPKLALD NKQRNGGAFH PFSKERNPCP SPNLRALPDL  180
ALASSEKEME DNKCLDTENG ISCPRRENIN GKVSNGGVVV EQGKGAGNSS EGQTNGANNS  240
SNANQTHRKA RRCWSPDLHR RFVNALQMLG GSQVATPKQI RELMKVDGLT NDEVKSHLQK  300
YRLHTRRPSP SPQATGGPTP QLVVLGGIWV QPEYATAAAA HSGASALYGA HPGSHAAPHY  360
CASPVPQDYY GAPPPPPPTH HQLHHHPLHH QLHVYKTTSQ AHSSPESDVR GTGDRSESIE  420
DGKSDSSSWK GESGENNAMR ERKGLVALRE DGEESNGSGI TLKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-13249302255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-13249302255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-13249302154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-13249302154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-13249302154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-13249302154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-13249302255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-13249302255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-13249302255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-13249302255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-13249302255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-13249302255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023919637.10.0myb family transcription factor EFM
SwissprotQ9ZQ851e-130EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A2N9FTW00.0A0A2N9FTW0_FAGSY; Uncharacterized protein
STRINGVIT_11s0016g04600.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54663455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-128G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]