PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold07391-augustus-gene-0.4-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 468aa    MW: 51735.6 Da    PI: 7.742
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold07391-augustus-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.43.3e-13137182147
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                   rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k++++r +k+
  maker-scaffold07391-augustus-gene-0.4-mRNA-1 137 RGHWRPAEDTKLKELVALYGPQNWNLIAEKLE-GRSGKEVRERSLKL 182
                                                   899*****************************.*********98776 PP
2Myb_DNA-binding55.41.4e-17210253146
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                                   r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  maker-scaffold07391-augustus-gene-0.4-mRNA-1 210 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 253
                                                   678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.623132187IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-13135178IPR009057Homeodomain-like
SMARTSM007171.9E-10136185IPR001005SANT/Myb domain
PfamPF002491.7E-12137182IPR001005SANT/Myb domain
SuperFamilySSF466894.67E-22137251IPR009057Homeodomain-like
CDDcd001677.22E-11140178No hitNo description
Gene3DG3DSA:1.10.10.609.1E-8194217IPR009057Homeodomain-like
PROSITE profilePS5129426.929205259IPR017930Myb domain
SMARTSM007171.8E-14209257IPR001005SANT/Myb domain
PfamPF002492.8E-14210252IPR001005SANT/Myb domain
CDDcd001671.16E-11212252No hitNo description
Gene3DG3DSA:1.10.10.603.0E-17218253IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MANNYAIYAP ENNPNGLSCY SSTPCSTSSS MGMVYADMGS LSLSPKYGVA STISSSQESN  60
LSKSSHEVEN HGRPCWGALP FMGKKNSNIT RSFEETHNSN AGEGKVSDSS DGFEQNNDKN  120
LVSGKDIDSG QSKLCARGHW RPAEDTKLKE LVALYGPQNW NLIAEKLEGR SGKEVRERSL  180
KLLFYFILVL VLCKSCRLRW FNQLDPRINR RAFSEEEEER LMQAHRIYGN KWAMIARLFP  240
GRTDNAVKNH WHVIMARKYR EQSNAYRRRK LGQSVFRRME ENPSLVCGDT ATRTEPLTYC  300
LNLPNGGLNN NITRFPFGAF NGGGGGGVDY NLNGLNGSPH LTNGGEAISS TKVPPYSGFC  360
ALQQTPFDFF TGSNSSDIMG RFSHGRSWDR PSDEANLSGF YSHYPPFMLA MQQSGNDNPY  420
DYLEPSATPT AQVSASEPSS SSATETRVGS QFETVPPPFI DFLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-301372587107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894953.10.0transcription factor MYB105-like
TrEMBLA0A2N9J6190.0A0A2N9J619_FAGSY; Uncharacterized protein
STRINGVIT_01s0026g02600.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-74myb domain protein 105