PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold07113-snap-gene-0.15-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

MYB_related

Protein Properties

Length: 1125aa MW: 124249 Da PI: 9.701

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold07113-snap-gene-0.15-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.5	3.6e-09	54	88	3	39
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 W++eE e+++ a +++G++ Wk++a+ + +R++ + maker-scaffold07113-snap-gene-0.15-mRNA-1 54 QWSKEELERFYAAYRKFGKD-WKKVAAAVR-NRSADM 88 5***************99.*****.9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.72E-10	51	99	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-4	51	99	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-5	54	89	IPR009057	Homeodomain-like
Pfam	PF00249	1.3E-7	54	89	IPR001005	SANT/Myb domain
CDD	cd00167	1.18E-5	55	89	No hit	No description
Pfam	PF06584	4.4E-32	612	712	IPR033471	DIRP domain
SMART	SM01135	2.9E-55	612	713	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1125 aa Download sequence Send to blast
MAPSRKSRSV NKRFSYINEV ASSKDGENAN KSRQRGSPGF VQKKRKLSDM LGAQWSKEEL 60 ERFYAAYRKF GKDWKKVAAA VRNRSADMVE ALYSMNKAYL SLPEGTASVV GLIAMMTDHY 120 CVLGGSDSEQ ESNEGAEASR KPQKRARVKT QNNTSKGLDG NFPDVSRSQS VASSYGCLSL 180 LKKRRSGIKP HAVGKRTPRV PVSYYDKDNA EKYFLPARQG SKQKVDSKDD DVAHEIALVL 240 TEASQRGGSP QLSRTPNRKA KGARPSPVKN GERMHAESET TCTKLRGSQV DEGGCELSLG 300 STEADNGDYA RDKGFLRGRE RAGTVGQQKV KRYHVKKPEV EESINNDVDD IKEACSGTEE 360 GQKPGAVKGK LESEVVRSPF KGLRKRSKKV LFGGESSAQV KEESLDKSKV KGNHSIPEAE 420 VSALRTSKLS KGFTHNIGAI PETKEEAHQS NTGIRKRKQK TSPFKIFEEE AHTNSHSEPK 480 KIEATAEVVS VSKGRRSSHN SAQAKQGRVV KPKERTSLST DLRGEGNDSA LPTVQVSSAD 540 QVNLPTKARS RRKVDLQKPV IQNDSKSAEN ILNDHPSIQI LSSHDRVLSL KEKLSNCLSS 600 DQARRWCTFE WFYSAIDYPW FAKREFMEYL DHVGLGLVPR LTRVEWGVIR SSLGRPRRFS 660 QQFLKEEREK LNQYRESVRG HYAELRAGTR EGLPTDLARP LSVGQRVIAL HPRTREIHNG 720 SVLTVDHCRC RIQFDQPELG VEFVLDIDCM PFNPLESMPA SLTRHNASVK LFENFNELKI 780 KFAPSENLES TDGPYISPSS HHISNLLKQG GSPSSSLQGK VRPTDIANTQ QAANSQPLLL 840 AQIQAKEADV QALSELTLTL DKKEAVLAEL RCMNDAVFDN QKNGDNSLKE SESFKKQYAA 900 VLLQLNEVSS ALFCLRQRNT YQESSPHLLL KSMANLGDPG GQLSSLECSA GHAQESGSHV 960 SEIVESSRKR AKTMVDVAMQ AVSSFKKGGV NMERIEEAMD FVNNQLSVDD SSMLVGRASA 1020 PADANHVTLA SQDQSTACSS VSSAINNAPD PNLDRLANQN EVKIPSELIV HCVATLLMIQ 1080 KCTERQFPPA VVAQKSDIGT RTYYIGLLRE SAMILGGEKA IIIII

Sequence ? help Back to Top

Protein Sequence Length: 1125 aa Download sequence Send to blast

MAPSRKSRSV NKRFSYINEV ASSKDGENAN KSRQRGSPGF VQKKRKLSDM LGAQWSKEEL  60
ERFYAAYRKF GKDWKKVAAA VRNRSADMVE ALYSMNKAYL SLPEGTASVV GLIAMMTDHY  120
CVLGGSDSEQ ESNEGAEASR KPQKRARVKT QNNTSKGLDG NFPDVSRSQS VASSYGCLSL  180
LKKRRSGIKP HAVGKRTPRV PVSYYDKDNA EKYFLPARQG SKQKVDSKDD DVAHEIALVL  240
TEASQRGGSP QLSRTPNRKA KGARPSPVKN GERMHAESET TCTKLRGSQV DEGGCELSLG  300
STEADNGDYA RDKGFLRGRE RAGTVGQQKV KRYHVKKPEV EESINNDVDD IKEACSGTEE  360
GQKPGAVKGK LESEVVRSPF KGLRKRSKKV LFGGESSAQV KEESLDKSKV KGNHSIPEAE  420
VSALRTSKLS KGFTHNIGAI PETKEEAHQS NTGIRKRKQK TSPFKIFEEE AHTNSHSEPK  480
KIEATAEVVS VSKGRRSSHN SAQAKQGRVV KPKERTSLST DLRGEGNDSA LPTVQVSSAD  540
QVNLPTKARS RRKVDLQKPV IQNDSKSAEN ILNDHPSIQI LSSHDRVLSL KEKLSNCLSS  600
DQARRWCTFE WFYSAIDYPW FAKREFMEYL DHVGLGLVPR LTRVEWGVIR SSLGRPRRFS  660
QQFLKEEREK LNQYRESVRG HYAELRAGTR EGLPTDLARP LSVGQRVIAL HPRTREIHNG  720
SVLTVDHCRC RIQFDQPELG VEFVLDIDCM PFNPLESMPA SLTRHNASVK LFENFNELKI  780
KFAPSENLES TDGPYISPSS HHISNLLKQG GSPSSSLQGK VRPTDIANTQ QAANSQPLLL  840
AQIQAKEADV QALSELTLTL DKKEAVLAEL RCMNDAVFDN QKNGDNSLKE SESFKKQYAA  900
VLLQLNEVSS ALFCLRQRNT YQESSPHLLL KSMANLGDPG GQLSSLECSA GHAQESGSHV  960
SEIVESSRKR AKTMVDVAMQ AVSSFKKGGV NMERIEEAMD FVNNQLSVDD SSMLVGRASA  1020
PADANHVTLA SQDQSTACSS VSSAINNAPD PNLDRLANQN EVKIPSELIV HCVATLLMIQ  1080
KCTERQFPPA VVAQKSDIGT RTYYIGLLRE SAMILGGEKA IIIII

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023908923.1	0.0	protein ALWAYS EARLY 3 isoform X2
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A2N9IY91	0.0	A0A2N9IY91_FAGSY; Uncharacterized protein
STRING	EOY06452	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]