PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold05960-augustus-gene-0.8-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB_related | ||||||||
Protein Properties | Length: 1046aa MW: 114740 Da PI: 4.4227 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.6 | 2.4e-12 | 901 | 944 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r rW++++ el+++av+q+G++ ++ I + ++ gRt+ q+k+++ k maker-scaffold05960-augustus-gene-0.8-mRNA-1 901 RTRWSKQDTELFYEAVRQFGTD-FSMIQQLFP-GRTRHQVKLKFKK 944 78********************.*********.**********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15963 | 1.3E-27 | 894 | 978 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-7 | 898 | 944 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 10.825 | 899 | 947 | IPR017884 | SANT domain |
SMART | SM00717 | 2.8E-10 | 900 | 948 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.64E-11 | 902 | 950 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.77E-8 | 903 | 944 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1046 aa Download sequence Send to blast |
MDSFDDILGE PAANRAQAGA KFRPKAKPRP RKEIPASVHP TVSSNTKEDT AILPITDVGT 60 LESIQPADVD NKLNNEFGSS IANSAENFTK NNEGSFSGVP NLDDTTKLIL VNPSSQVVAT 120 SEGVVSIDAL PKEVAVTDIN GDWHFSFRQS ETEADSVGLD VDRSADISPE PVTLTPAGSD 180 FKTSVQALDI ADDRLKDPFT LSITTPEIVG TKLPGNECSI SDDLHSEAAI LDGNGKLHPN 240 NKKLAEEVDS LGLDLDPFED NLHGHVTSKS RGGGKFKPKA KIHPKNETST SLPSAPSTAA 300 EEKPVMLSST SLETEQYAQP VAENKLTNED GLSAVTLEIV GTREPSKDNE CSFPDKRSSE 360 SIKSSSQLVM GEDAGSRDAL QSEVAMCDSN SVWHSSIGML SSEVDCMGFE LEPFGDNEGE 420 GSLFHAETST LLASNNKDME ENFGIPACSS IDSSALRVCD SVEPHTCSDP HMAPDPVTCG 480 EDAFSNQYGD FQIENGRLDT EEAGTFSGME SLDFMSEANI ASGRQTGKFR PKPKMKTGKE 540 KHSIAISHPQ AESVLHLQGP QLVTSETGYM ASVPAFPADC EQDDSMRFGE FIPSDPASII 600 MMNEELRNLA ETSHSDGPIL GDILHSEDVP EIPVEVNAKI GKGEASTASN LPQKQKQSAT 660 AGEENDGGKS SRKLRKRVAF QLIDEQDDGA NDDVSAEPPS NSSIDEDEDE DNNDEYKVES 720 KSQKKRAPRK SKKPEAENGK PLRKRKKANE AADQSTVKPP KKFSHSTRRN RRCVDKALLE 780 TPEDEIDPQR LPIKDLILLA EHKERLAVDS FPDYTPGVLV EALMPILFVK NKQNDKRKAT 840 QDTKVNLVCS SNSFHEEDPY NGEEAFASEQ GRGSDDDEPG YEVPISDRLI NYQSYMDKTP 900 RTRWSKQDTE LFYEAVRQFG TDFSMIQQLF PGRTRHQVKL KFKKEERQYP FRLSEALASR 960 SKDHSHFQLV IERLQQASQA EQHSNREDSV GLTVEEEVEG LETETNEAAK PEEDEEVVIK 1020 DQEVDFAEVH SPVKSYASDD GPDDWI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 723 | 745 | KKRAPRKSKKPEAENGKPLRKRK |
2 | 739 | 745 | KPLRKRK |
3 | 742 | 746 | RKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023909068.1 | 0.0 | uncharacterized protein LOC112020745 isoform X2 | ||||
TrEMBL | A0A2N9J4E0 | 0.0 | A0A2N9J4E0_FAGSY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3666 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.1 | 4e-50 | MYB_related family protein |