PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold05960-augustus-gene-0.8-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 1046aa    MW: 114740 Da    PI: 4.4227
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold05960-augustus-gene-0.8-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.4e-12901944146
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                                   r rW++++ el+++av+q+G++ ++ I + ++ gRt+ q+k+++ k
  maker-scaffold05960-augustus-gene-0.8-mRNA-1 901 RTRWSKQDTELFYEAVRQFGTD-FSMIQQLFP-GRTRHQVKLKFKK 944
                                                   78********************.*********.**********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.3E-27894978No hitNo description
Gene3DG3DSA:1.10.10.601.4E-7898944IPR009057Homeodomain-like
PROSITE profilePS5129310.825899947IPR017884SANT domain
SMARTSM007172.8E-10900948IPR001005SANT/Myb domain
SuperFamilySSF466894.64E-11902950IPR009057Homeodomain-like
CDDcd001677.77E-8903944No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1046 aa     Download sequence    Send to blast
MDSFDDILGE PAANRAQAGA KFRPKAKPRP RKEIPASVHP TVSSNTKEDT AILPITDVGT  60
LESIQPADVD NKLNNEFGSS IANSAENFTK NNEGSFSGVP NLDDTTKLIL VNPSSQVVAT  120
SEGVVSIDAL PKEVAVTDIN GDWHFSFRQS ETEADSVGLD VDRSADISPE PVTLTPAGSD  180
FKTSVQALDI ADDRLKDPFT LSITTPEIVG TKLPGNECSI SDDLHSEAAI LDGNGKLHPN  240
NKKLAEEVDS LGLDLDPFED NLHGHVTSKS RGGGKFKPKA KIHPKNETST SLPSAPSTAA  300
EEKPVMLSST SLETEQYAQP VAENKLTNED GLSAVTLEIV GTREPSKDNE CSFPDKRSSE  360
SIKSSSQLVM GEDAGSRDAL QSEVAMCDSN SVWHSSIGML SSEVDCMGFE LEPFGDNEGE  420
GSLFHAETST LLASNNKDME ENFGIPACSS IDSSALRVCD SVEPHTCSDP HMAPDPVTCG  480
EDAFSNQYGD FQIENGRLDT EEAGTFSGME SLDFMSEANI ASGRQTGKFR PKPKMKTGKE  540
KHSIAISHPQ AESVLHLQGP QLVTSETGYM ASVPAFPADC EQDDSMRFGE FIPSDPASII  600
MMNEELRNLA ETSHSDGPIL GDILHSEDVP EIPVEVNAKI GKGEASTASN LPQKQKQSAT  660
AGEENDGGKS SRKLRKRVAF QLIDEQDDGA NDDVSAEPPS NSSIDEDEDE DNNDEYKVES  720
KSQKKRAPRK SKKPEAENGK PLRKRKKANE AADQSTVKPP KKFSHSTRRN RRCVDKALLE  780
TPEDEIDPQR LPIKDLILLA EHKERLAVDS FPDYTPGVLV EALMPILFVK NKQNDKRKAT  840
QDTKVNLVCS SNSFHEEDPY NGEEAFASEQ GRGSDDDEPG YEVPISDRLI NYQSYMDKTP  900
RTRWSKQDTE LFYEAVRQFG TDFSMIQQLF PGRTRHQVKL KFKKEERQYP FRLSEALASR  960
SKDHSHFQLV IERLQQASQA EQHSNREDSV GLTVEEEVEG LETETNEAAK PEEDEEVVIK  1020
DQEVDFAEVH SPVKSYASDD GPDDWI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1723745KKRAPRKSKKPEAENGKPLRKRK
2739745KPLRKRK
3742746RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023909068.10.0uncharacterized protein LOC112020745 isoform X2
TrEMBLA0A2N9J4E00.0A0A2N9J4E0_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36662938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.14e-50MYB_related family protein