PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold05960-augustus-gene-0.8-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

MYB_related

Protein Properties

Length: 1046aa MW: 114740 Da PI: 4.4227

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold05960-augustus-gene-0.8-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.6	2.4e-12	901	944	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r rW++++ el+++av+q+G++ ++ I + ++ gRt+ q+k+++ k maker-scaffold05960-augustus-gene-0.8-mRNA-1 901 RTRWSKQDTELFYEAVRQFGTD-FSMIQQLFP-GRTRHQVKLKFKK 944 78******************.*****.********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	1.3E-27	894	978	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.4E-7	898	944	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.825	899	947	IPR017884	SANT domain
SMART	SM00717	2.8E-10	900	948	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.64E-11	902	950	IPR009057	Homeodomain-like
CDD	cd00167	7.77E-8	903	944	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1046 aa Download sequence Send to blast
MDSFDDILGE PAANRAQAGA KFRPKAKPRP RKEIPASVHP TVSSNTKEDT AILPITDVGT 60 LESIQPADVD NKLNNEFGSS IANSAENFTK NNEGSFSGVP NLDDTTKLIL VNPSSQVVAT 120 SEGVVSIDAL PKEVAVTDIN GDWHFSFRQS ETEADSVGLD VDRSADISPE PVTLTPAGSD 180 FKTSVQALDI ADDRLKDPFT LSITTPEIVG TKLPGNECSI SDDLHSEAAI LDGNGKLHPN 240 NKKLAEEVDS LGLDLDPFED NLHGHVTSKS RGGGKFKPKA KIHPKNETST SLPSAPSTAA 300 EEKPVMLSST SLETEQYAQP VAENKLTNED GLSAVTLEIV GTREPSKDNE CSFPDKRSSE 360 SIKSSSQLVM GEDAGSRDAL QSEVAMCDSN SVWHSSIGML SSEVDCMGFE LEPFGDNEGE 420 GSLFHAETST LLASNNKDME ENFGIPACSS IDSSALRVCD SVEPHTCSDP HMAPDPVTCG 480 EDAFSNQYGD FQIENGRLDT EEAGTFSGME SLDFMSEANI ASGRQTGKFR PKPKMKTGKE 540 KHSIAISHPQ AESVLHLQGP QLVTSETGYM ASVPAFPADC EQDDSMRFGE FIPSDPASII 600 MMNEELRNLA ETSHSDGPIL GDILHSEDVP EIPVEVNAKI GKGEASTASN LPQKQKQSAT 660 AGEENDGGKS SRKLRKRVAF QLIDEQDDGA NDDVSAEPPS NSSIDEDEDE DNNDEYKVES 720 KSQKKRAPRK SKKPEAENGK PLRKRKKANE AADQSTVKPP KKFSHSTRRN RRCVDKALLE 780 TPEDEIDPQR LPIKDLILLA EHKERLAVDS FPDYTPGVLV EALMPILFVK NKQNDKRKAT 840 QDTKVNLVCS SNSFHEEDPY NGEEAFASEQ GRGSDDDEPG YEVPISDRLI NYQSYMDKTP 900 RTRWSKQDTE LFYEAVRQFG TDFSMIQQLF PGRTRHQVKL KFKKEERQYP FRLSEALASR 960 SKDHSHFQLV IERLQQASQA EQHSNREDSV GLTVEEEVEG LETETNEAAK PEEDEEVVIK 1020 DQEVDFAEVH SPVKSYASDD GPDDWI

Sequence ? help Back to Top

Protein Sequence Length: 1046 aa Download sequence Send to blast

MDSFDDILGE PAANRAQAGA KFRPKAKPRP RKEIPASVHP TVSSNTKEDT AILPITDVGT  60
LESIQPADVD NKLNNEFGSS IANSAENFTK NNEGSFSGVP NLDDTTKLIL VNPSSQVVAT  120
SEGVVSIDAL PKEVAVTDIN GDWHFSFRQS ETEADSVGLD VDRSADISPE PVTLTPAGSD  180
FKTSVQALDI ADDRLKDPFT LSITTPEIVG TKLPGNECSI SDDLHSEAAI LDGNGKLHPN  240
NKKLAEEVDS LGLDLDPFED NLHGHVTSKS RGGGKFKPKA KIHPKNETST SLPSAPSTAA  300
EEKPVMLSST SLETEQYAQP VAENKLTNED GLSAVTLEIV GTREPSKDNE CSFPDKRSSE  360
SIKSSSQLVM GEDAGSRDAL QSEVAMCDSN SVWHSSIGML SSEVDCMGFE LEPFGDNEGE  420
GSLFHAETST LLASNNKDME ENFGIPACSS IDSSALRVCD SVEPHTCSDP HMAPDPVTCG  480
EDAFSNQYGD FQIENGRLDT EEAGTFSGME SLDFMSEANI ASGRQTGKFR PKPKMKTGKE  540
KHSIAISHPQ AESVLHLQGP QLVTSETGYM ASVPAFPADC EQDDSMRFGE FIPSDPASII  600
MMNEELRNLA ETSHSDGPIL GDILHSEDVP EIPVEVNAKI GKGEASTASN LPQKQKQSAT  660
AGEENDGGKS SRKLRKRVAF QLIDEQDDGA NDDVSAEPPS NSSIDEDEDE DNNDEYKVES  720
KSQKKRAPRK SKKPEAENGK PLRKRKKANE AADQSTVKPP KKFSHSTRRN RRCVDKALLE  780
TPEDEIDPQR LPIKDLILLA EHKERLAVDS FPDYTPGVLV EALMPILFVK NKQNDKRKAT  840
QDTKVNLVCS SNSFHEEDPY NGEEAFASEQ GRGSDDDEPG YEVPISDRLI NYQSYMDKTP  900
RTRWSKQDTE LFYEAVRQFG TDFSMIQQLF PGRTRHQVKL KFKKEERQYP FRLSEALASR  960
SKDHSHFQLV IERLQQASQA EQHSNREDSV GLTVEEEVEG LETETNEAAK PEEDEEVVIK  1020
DQEVDFAEVH SPVKSYASDD GPDDWI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	723	745	KKRAPRKSKKPEAENGKPLRKRK
2	739	745	KPLRKRK
3	742	746	RKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023909068.1	0.0	uncharacterized protein LOC112020745 isoform X2
TrEMBL	A0A2N9J4E0	0.0	A0A2N9J4E0_FAGSY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3666	29	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	4e-50	MYB_related family protein