PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold05870-snap-gene-0.15-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 184aa    MW: 21696 Da    PI: 9.9186
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold05870-snap-gene-0.15-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.44e-1729114190
                                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkv 68 
                                                ++YneY ++ GFs+rk++ ++   ng + + +fvCsk+g++e e+   + ++ ++ etrtgC a+++ 
  maker-scaffold05870-snap-gene-0.15-mRNA-1  29 NMYNEYTSKKGFSIRKAARRTV--NGVVRQGEFVCSKQGFKEFEDPL-DVKKYNHLETRTGCCARIQF 93 
                                                58***************98887..*******************9988.89999*************** PP

                                       FAR1  69 kkekdgkwevtkleleHnHela 90 
                                                  + ++   v++++  H+He+a
  maker-scaffold05870-snap-gene-0.15-mRNA-1  94 DVK-NDIRIVSHFNDIHTHEFA 114
                                                *99.9999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1330114IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MRMSLMWIEA MMKEKILRMN ASSEEKAYNM YNEYTSKKGF SIRKAARRTV NGVVRQGEFV  60
CSKQGFKEFE DPLDVKKYNH LETRTGCCAR IQFDVKNDIR IVSHFNDIHT HEFASPEERC  120
NLRSGRKSLR QLREKKCPSF DVDFFLAKMK STQRNESTNS VFHKIMKTSL PLIQVIEFYE  180
EKVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023875445.17e-50protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_023919402.17e-50protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2N9F5N91e-53A0A2N9F5N9_FAGSY; Uncharacterized protein
STRINGXP_006485311.12e-26(Citrus sinensis)
STRINGXP_004305835.12e-27(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3607938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-08FAR1-related sequence 5