PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold04005-augustus-gene-0.15-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB | ||||||||
Protein Properties | Length: 356aa MW: 39165 Da PI: 8.2183 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.8 | 9.4e-17 | 98 | 143 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W++Ia+ + gR++k+c++rw++ maker-scaffold04005-augustus-gene-0.15-mRNA-1 98 RGHWRPAEDAKLKELVAQYGPQNWNLIAENLE-GRSGKSCRLRWFNQ 143 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 55.2 | 1.6e-17 | 150 | 193 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l+ a+k++G++ W+ Iar ++ gRt++ +k++w+ maker-scaffold04005-augustus-gene-0.15-mRNA-1 150 RRAFTEEEEERLLGAHKLYGNK-WAMIARLFP-GRTDNAVKNHWHV 193 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.784 | 93 | 144 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-14 | 97 | 146 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.12E-28 | 98 | 191 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.5E-16 | 98 | 143 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-26 | 99 | 151 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.87E-14 | 101 | 142 | No hit | No description |
PROSITE profile | PS51294 | 26.539 | 145 | 199 | IPR017930 | Myb domain |
SMART | SM00717 | 5.5E-14 | 149 | 197 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-14 | 150 | 192 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-20 | 152 | 198 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.13E-11 | 152 | 192 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MSPQHLKSDG NGFSGYKNMN FMLPPPPPPL GVIVGHPLEK DSKTSEMGFQ ILNPSIEKRV 60 GDGYLGDERN GLSLKFGEEE EGKSSGAGKI GHTKLCARGH WRPAEDAKLK ELVAQYGPQN 120 WNLIAENLEG RSGKSCRLRW FNQLDPRINR RAFTEEEEER LLGAHKLYGN KWAMIARLFP 180 GRTDNAVKNH WHVIMARKHR EQSSVYRRRK PSSQVLTDMT IQNNACSEST HSSTMDESGS 240 TCTDLSLTPS SNKVPQSPIT KFSPVQQYQS YGSKMGSLGD GGFDKFYCTG NGFYQPGLMG 300 TVMGVDPSGH SDSNSEVSAA ESVATNKTGI SVSGENEILN EKIKMPFIDF LGVGAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-34 | 98 | 198 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023880716.1 | 0.0 | transcription factor CSA-like | ||||
Swissprot | Q5NBM8 | 2e-77 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | A0A2N9IJN5 | 0.0 | A0A2N9IJN5_FAGSY; Uncharacterized protein | ||||
STRING | cassava4.1_024606m | 1e-150 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 5e-74 | myb domain protein 105 |