PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03483-augustus-gene-0.17-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family AP2
Protein Properties Length: 345aa    MW: 39139.7 Da    PI: 8.9619
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03483-augustus-gene-0.17-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.54.3e-101874155
                                            AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55
                                                   s+++ V++++++gr++A+++d  s+n   k+k  + g ++ +e Aa+a++ a++k++g
  maker-scaffold03483-augustus-gene-0.17-mRNA-1 18 SRFRRVSRHRWTGRYEAHLWDkGSWNPtqKKKGKQ-GAYDEEESAARAYDLAALKYWG 74
                                                   68999****************88887784446666.9*******************98 PP
2AP230.59.2e-10114158855
                                            AP2   8 wdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                    +   +  W+A+I   +   g +++ +lg++ t eeAa a++ a+ +++g
  maker-scaffold03483-augustus-gene-0.17-mRNA-1 114 RGTITMVWEARIGRvF---G-NRYLYLGTYSTQEEAAHAYDIAAIEYKG 158
                                                    5556788****99966...3.6************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.09E-121984IPR016177DNA-binding domain
PROSITE profilePS5103216.8051982IPR001471AP2/ERF domain
SMARTSM003802.4E-151988IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-102083IPR001471AP2/ERF domain
PfamPF008479.0E-62174IPR001471AP2/ERF domain
CDDcd000183.09E-133084No hitNo description
PROSITE profilePS5103214.117100166IPR001471AP2/ERF domain
CDDcd000181.02E-16106168No hitNo description
SMARTSM003807.4E-13106172IPR001471AP2/ERF domain
PfamPF008472.9E-6110158IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-11120168IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.2E-12121167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
KQPQPDQPTT VTGVKRSSRF RRVSRHRWTG RYEAHLWDKG SWNPTQKKKG KQGAYDEEES  60
AARAYDLAAL KYWGTSTFTN FPVSDYEKEI VVMRTMTKEE YLASLRRRSS GLSRGTITMV  120
WEARIGRVFG NRYLYLGTYS TQEEAAHAYD IAAIEYKGIS AVTNFDLSTY IRWLRPSASS  180
LVSQQPKSSV ASSTIANQET TEQSIFHSNS FTENRLDTLR QQEVLQSETS ISPCTKSSTP  240
RALGLLLRSS LYRELTEKNL NTTDKDTEES DTKILLHPSI DNGFGGFFCN EIGYNSCMCS  300
NNGNKLLGLE SPEEIALPFY HRSGQSFWND TLGLTSLTKR VLYQI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14351PTQKKKGKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022775800.11e-148AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2N9EBP61e-164A0A2N9EBP6_FAGSY; Uncharacterized protein
STRINGEOY020491e-141(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-51AP2 family protein