PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold03209-snap-gene-0.21-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HD-ZIP
Protein Properties Length: 194aa    MW: 22228.2 Da    PI: 8.4554
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold03209-snap-gene-0.21-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-193084357
                                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                                   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                                               k+ ++t++ql+ Le+ F+++ +++ +++ +L+k+lgL+ rq+ vWFqNrRa++k+
  maker-scaffold03209-snap-gene-0.21-mRNA-1 30 KKKRLTSDQLDSLERSFQEEIKLDPDRKIKLSKELGLQPRQIAVWFQNRRARWKN 84
                                               56779************************************************95 PP
2HD-ZIP_I/II120.49.5e-3929120192
                                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkr 68 
                                                ekk+rl+++q+ +LE+sF+ee kL+p+rK +l++eLglqprq+avWFqnrRAR+k+kqlE+ y+aLk+
  maker-scaffold03209-snap-gene-0.21-mRNA-1  29 EKKKRLTSDQLDSLERSFQEEIKLDPDRKIKLSKELGLQPRQIAVWFQNRRARWKNKQLEHLYDALKQ 96 
                                                69****************************************************************** PP

                                HD-ZIP_I/II  69 aydalkeenerLekeveeLreelk 92 
                                                +yda+++e+++L++ev +L++ l+
  maker-scaffold03209-snap-gene-0.21-mRNA-1  97 EYDAISREKQKLQEEVMKLKAMLQ 120
                                                ********************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.13E-20987IPR009057Homeodomain-like
PROSITE profilePS5007117.3132585IPR001356Homeobox domain
SMARTSM003894.5E-192889IPR001356Homeobox domain
CDDcd000861.01E-163086No hitNo description
PfamPF000467.6E-173084IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.6E-213192IPR009057Homeodomain-like
PRINTSPR000314.1E-55665IPR000047Helix-turn-helix motif
PROSITE patternPS0002706083IPR017970Homeobox, conserved site
PRINTSPR000314.1E-56581IPR000047Helix-turn-helix motif
PfamPF021832.8E-985120IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEVKHPGMVD SGHGMLPAME KNNFGSCQEK KKRLTSDQLD SLERSFQEEI KLDPDRKIKL  60
SKELGLQPRQ IAVWFQNRRA RWKNKQLEHL YDALKQEYDA ISREKQKLQE EVMKLKAMLQ  120
REQAARKQVS TGYTEISGEE TVESTSVAIN GCNNKPRGPG HHQITDCNFL FSVEEYNPVA  180
SAPAYWAGLT SYPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17785RRARWKNKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023885965.11e-132putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR04e-55ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A2N9FKK51e-112A0A2N9FKK5_FAGSY; Uncharacterized protein
STRINGXP_002528635.15e-97(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.12e-57homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]