PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold03184-snap-gene-0.22-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | C2H2 | ||||||||
Protein Properties | Length: 362aa MW: 39661.6 Da PI: 6.4995 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.8 | 2.3e-07 | 164 | 185 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H maker-scaffold03184-snap-gene-0.22-mRNA-1 164 FCEICGKGFKRDANLRMHMRAH 185 6*******************99 PP | |||||||
2 | zf-C2H2 | 11.8 | 0.00077 | 262 | 278 | 5 | 21 |
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 Cg+sFsrk+ L H+ maker-scaffold03184-snap-gene-0.22-mRNA-1 262 TCGTSFSRKDKLFGHMT 278 6**************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.64E-6 | 160 | 188 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 162 | 186 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.591 | 163 | 190 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0015 | 163 | 185 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 0.002 | 164 | 183 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 165 | 185 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 46 | 193 | 226 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 13 | 231 | 253 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 230 | 259 | 283 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MFNTGESYRI PAGYSAGLGH NPGQNRVGSS DSRVPLLNLS TVRTRMDSLQ RFLSDTVNRN 60 HLISQDQMDM VSTEIVSAIH QIIVNGAALL SCSQTSDLTA AAAPAEIATP SSTTPPKLAA 120 DSSVPLKVEA SDSDDFKVEN SFLDSDSEIV ELDAVELLAE HIHFCEICGK GFKRDANLRM 180 HMRAHGNHRH TKFSCPYDGC NRNKSHKKFR PLKSVICVKN HFKRSHCPKM YSCNRCNKKS 240 FSVVADLKNH LKHCGEARWK CTCGTSFSRK DKLFGHMTLF EGHMPAVGGD DNECPKIAPD 300 SSAAVTAMEE DDEEVVMGSG SGSDNGLLFD GLLDDFGGSI ESYYCFQDML GSPQLNGMEL 360 NL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023892361.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
TrEMBL | A0A2N9IY99 | 0.0 | A0A2N9IY99_FAGSY; Uncharacterized protein | ||||
STRING | POPTR_0007s05340.1 | 1e-136 | (Populus trichocarpa) | ||||
STRING | cassava4.1_009526m | 1e-136 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6855 | 31 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 6e-69 | C2H2 family protein |