PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold02946-augustus-gene-0.17-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

C2H2

Protein Properties

Length: 332aa MW: 38402.4 Da PI: 8.2217

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold02946-augustus-gene-0.17-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00074	187	211	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C C+k ++ ++++ H+++ H maker-scaffold02946-augustus-gene-0.17-mRNA-1 187 FYCDLCNKQYKLAMEFEAHLSSydH 211 78*****************987555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00443	8.2E-18	53	98	IPR000467	G-patch domain
PROSITE profile	PS50174	16.357	55	100	IPR000467	G-patch domain
Pfam	PF01585	1.2E-15	56	96	IPR000467	G-patch domain
SuperFamily	SSF57667	6.95E-5	185	214	No hit	No description
Pfam	PF12171	1.9E-5	187	214	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	189	211	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MSARDKQHHE KEQAYRDSLI EDLADDFRLP INHRLTENVD LDNVEQASLD TQLTSSNIGF 60 RLLQKMGWKG KGLGKDEQGI IEPIRSGIRD PKLGVGKQEQ DDFFTAEENI QRRKLDVEVE 120 ETEEHAKKRE VCLLNWDHQL WKVLRISCSF YYLVASTACF VHIMKIQVLA EREQKIQIEV 180 KEIRKVFYCD LCNKQYKLAM EFEAHLSSYD HNHRKIFSVL KKMREMHGSS SRDDRQKREQ 240 QRQEREMAKF AQIENARKQQ QLQQQQEDSG SAPVPTEVKV ATALTDQEPR KVLKFGFSSK 300 GGTSKNSFGS AAKKKPKVAV ASVFGNDSDE EK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023875215.1	0.0	G patch domain-containing protein 8
TrEMBL	A0A2N9EHY5	1e-177	A0A2N9EHY5_FAGSY; Uncharacterized protein
STRING	VIT_14s0060g00320.t01	1e-162	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5977	24	28