PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02881-augustus-gene-0.26-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bZIP
Protein Properties Length: 482aa    MW: 53481.8 Da    PI: 6.807
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02881-augustus-gene-0.26-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.39.4e-10199237745
                                                    HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                         bZIP_1   7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                                                     rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  maker-scaffold02881-augustus-gene-0.26-mRNA-1 199 LRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 237
                                                    599***********************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.1E-6192256IPR004827Basic-leucine zipper domain
CDDcd147081.08E-21198249No hitNo description
PfamPF001709.7E-7199237IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.19E-6199240No hitNo description
Gene3DG3DSA:1.20.5.1701.5E-7200241No hitNo description
PROSITE patternPS000360200215IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.726200239IPR004827Basic-leucine zipper domain
PfamPF141445.2E-33279354IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MPSFDSQLAV SNAVGSEGLM RPMRSYVQNL YPTSLSNLQG SPPLVCTEGN TTHSFRISDF  60
GVFDQAVGFR LEDAVNVSEN TVFSSTKVSG QAVSSDPLHL YTSDKSPTSL DINPSTFRVE  120
RQRLPLEKGH PSNLVSVSSG NIENWEESAM ADASPRTDIS TDVETDDKNQ RFDRSQSIAN  180
VASDSSDRSK DKSDQKVTLR RLAQNREAAR KSRLRKKAYV QQLESSRLKL TQLEQELQRA  240
RQQGIFISSS GDQAHSMSGN GAMAFDVEYA RWLEEQNRQV NELRSAVNSH ASDAELRIIV  300
DNILAHYDDL FRLKGVAAKA DVFHLLSGMW KTPAERCFLW LGGFRSSELL KLLVNQLEPL  360
TEQQLVGINN LQQSSQQAED ALSQGMEALQ QSLAETLSSG TLGSSGSSGN VANYMGQMAM  420
AMGKLGTLEG FIRQADNLRQ QTLQQMHRIL TTRQSARALL AIHDYFSRLR ALSSLWLARP  480
RE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023917442.10.0transcription factor TGA2.2-like isoform X1
RefseqXP_023917443.10.0transcription factor TGA2.2-like isoform X1
SwissprotQ6IVC20.0TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLA0A2I4GZU00.0A0A2I4GZU0_JUGRE; transcription factor TGA2-like isoform X1
STRINGVIT_13s0084g00660.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-154TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]