PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02537-snap-gene-0.13-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family TALE
Protein Properties Length: 110aa    MW: 13122 Da    PI: 10.6405
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02537-snap-gene-0.13-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.46.6e-1053872155
                                               HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                                   Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55
                                               k +yp++ ++  LA+++gL+++q+ +WF N+R ++
  maker-scaffold02537-snap-gene-0.13-mRNA-1 53 KWPYPTEGDKIALAESTGLDQKQINNWFINQRKRH 87
                                               679*****************************985 PP
2ELK28.92.6e-10728122
                                        ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                                               +LK++Llr +++++g+Lk EFs
  maker-scaffold02537-snap-gene-0.13-mRNA-1  7 DLKDRLLRRFGSHIGTLKLEFS 28
                                               6********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011881.1E-4728IPR005539ELK domain
PROSITE profilePS512139.394727IPR005539ELK domain
PfamPF037896.6E-8728IPR005539ELK domain
PROSITE profilePS5007112.6332790IPR001356Homeobox domain
SuperFamilySSF466895.13E-2028100IPR009057Homeodomain-like
SMARTSM003899.3E-132994IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-283292IPR009057Homeodomain-like
CDDcd000861.16E-103691No hitNo description
PfamPF059203.9E-184786IPR008422Homeobox KN domain
PROSITE patternPS0002706588IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MRGEDRDLKD RLLRRFGSHI GTLKLEFSKK KKKGKLPREA RQALLEWWNV HYKWPYPTEG  60
DKIALAESTG LDQKQINNWF INQRKRHWKP SENMQLAVRD NLSGPFFADD
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2384671e-132KC238467.1 Betula luminifera KNOX transcription factor 2 (KNOX2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299002.15e-62PREDICTED: homeobox protein knotted-1-like 6
RefseqXP_018830976.13e-64PREDICTED: homeobox protein knotted-1-like 4
SwissprotQ84JS64e-58KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A2I4FH616e-63A0A2I4FH61_JUGRE; homeobox protein knotted-1-like 4
TrEMBLV5K9533e-61V5K953_9ROSI; KNOX transcription factor 2
STRINGXP_004299002.12e-61(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.21e-44KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]