PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold02360-snap-gene-0.37-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | bHLH | ||||||||
Protein Properties | Length: 164aa MW: 17988.6 Da PI: 8.2106 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.4 | 0.00029 | 47 | 94 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r ++ + R +++ +++ L++l+ + +K + a++L A+eYI+ L maker-scaffold02360-snap-gene-0.37-mRNA-1 47 RHKADLSAKERKEKLGERIVSLQQLVSPF-----GKTDTASVLCDAMEYINFL 94 6666667789999999**********998.....8***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.468 | 45 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-12 | 45 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-8 | 45 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.44E-6 | 45 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MIVSSSFCNA DSQFSGEEEI EVGKMMEHKR SPCSVEQSGL TSLASKRHKA DLSAKERKEK 60 LGERIVSLQQ LVSPFGKTDT ASVLCDAMEY INFLHDQVKV LSAPYLQSNP SKMQELGPYS 120 LRSRGLCLVP VSCTAGVARS NGADIWAPIK TTSPKFEKAI SQFQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF457661 | 0.0 | AF457661.2 Castanea dentata clone ACS10A vascular protein gene, promoter region. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023875345.1 | 1e-118 | transcription factor bHLH153 | ||||
Swissprot | Q7XJU2 | 2e-57 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | A0A2I4G952 | 9e-91 | A0A2I4G952_JUGRE; transcription factor bHLH113-like isoform X1 | ||||
STRING | XP_008222500.1 | 1e-90 | (Prunus mume) | ||||
STRING | EMJ24804 | 1e-90 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10813 | 31 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.5 | 8e-60 | bHLH family protein |
Publications ? help Back to Top | |||
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