PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold02319-augustus-gene-0.30-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Protein Properties

Length: 933aa MW: 102687 Da PI: 6.5452

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold02319-augustus-gene-0.30-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56	7.4e-18	333	432	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryv 60 f+k l+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yv maker-scaffold02319-augustus-gene-0.30-mRNA-1 333 FEKMLSASDAGRIGRLVLPKACAEAYfpAISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYV 396 89************************666667778***********9989999999 PP E-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 61 ltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 l+ G ++ +L++gD+v+F++++ e++l +++++ maker-scaffold02319-augustus-gene-0.30-mRNA-1 397 LE-GVTPCIQSMQLQAGDTVTFSRMD-PEGKLIMGFRK 432 9.*******************876.77777777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.7E-28	325	436	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.49E-18	330	432	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.49E-21	331	432	No hit	No description
PROSITE profile	PS50863	11.138	333	434	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.9E-15	333	432	IPR003340	B3 DNA binding domain
SMART	SM01019	1.3E-18	333	434	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	13.865	609	659	IPR011124	Zinc finger, CW-type
Pfam	PF07496	4.5E-11	614	656	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010030	Biological Process	positive regulation of seed germination
GO:2000034	Biological Process	regulation of seed maturation
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 933 aa Download sequence Send to blast
MASSNSKKTC MNVLCDASTS ADSKKGWALR SGDFAKLCDK CGSVYEQSIF CDVYHSKDSG 60 WRECTSCGKR LHCGCITSIS LVELLDCGGV SCINCAKNSG LVPISSNEKL DGFGTSKVDN 120 VNELHPSPMD TQLDGNGIEK LKLMQLSNNF DGNGLRHLLQ SHNADTIGSF GKLKEEEVFP 180 SVGEIGTACF SNFNQACNGS SNTTKPDMYK ANMGAKDIYE SLPQTNLSMT LGAPSGNSSP 240 LPSAVADERE NRKTSSPFLQ GPRSRHLLPK PPRSALAGGL EANAGMVSQI RVARPPAEGR 300 GRNQLLPRYW PRITDQELQQ ISGDSNSTIV PLFEKMLSAS DAGRIGRLVL PKACAEAYFP 360 AISQPEGLPL RIQDVKGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDTVTFSRM 420 DPEGKLIMGF RKASNSVAMQ DTYPSAIPNG AHSSETLFSG IFENLPIISG YSGLLQSLKG 480 TADPNLNALS KHLSSATGDI SWHKSEKLED RTREGLLLPP ERKKARNIGS KSKRLLIDSQ 540 DVLELKLTWE EAQDLLYPPP TFKPSIVMIE DHEFEENLQS LEREVFLLLV QLGRGWINPS 600 NLELISLIFR GQEQWAQCDS CSKWRRLPVD ILIPPKWTCA DNAWDQNRCS CSAPDELNPR 660 ELENLLRLNR EFKKRRTMTS NRPNQGHESS GLDALANAAI LGDSVGDPGT TSVATTTKHP 720 RHRPGCSCIV CIQPPSGKGK HKPTCTCNVC MTVKRRFKTL MMRKKKRQSE REAEIAQRNQ 780 QTWGSRDEAE VDSTSRHASS HLDPSENEAR SANELESKSQ SKLVDTGKGH LDLNCHPDQE 840 EELQAGSKRM SMMSLLQEAS LPLETYLKQN GLTLTSLITE QQASSASQIP PHASNENEGQ 900 LNEDCCFVSA EQEREGGGEE DCGPDLSQND AQS

Sequence ? help Back to Top

Protein Sequence Length: 933 aa Download sequence Send to blast

MASSNSKKTC MNVLCDASTS ADSKKGWALR SGDFAKLCDK CGSVYEQSIF CDVYHSKDSG  60
WRECTSCGKR LHCGCITSIS LVELLDCGGV SCINCAKNSG LVPISSNEKL DGFGTSKVDN  120
VNELHPSPMD TQLDGNGIEK LKLMQLSNNF DGNGLRHLLQ SHNADTIGSF GKLKEEEVFP  180
SVGEIGTACF SNFNQACNGS SNTTKPDMYK ANMGAKDIYE SLPQTNLSMT LGAPSGNSSP  240
LPSAVADERE NRKTSSPFLQ GPRSRHLLPK PPRSALAGGL EANAGMVSQI RVARPPAEGR  300
GRNQLLPRYW PRITDQELQQ ISGDSNSTIV PLFEKMLSAS DAGRIGRLVL PKACAEAYFP  360
AISQPEGLPL RIQDVKGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDTVTFSRM  420
DPEGKLIMGF RKASNSVAMQ DTYPSAIPNG AHSSETLFSG IFENLPIISG YSGLLQSLKG  480
TADPNLNALS KHLSSATGDI SWHKSEKLED RTREGLLLPP ERKKARNIGS KSKRLLIDSQ  540
DVLELKLTWE EAQDLLYPPP TFKPSIVMIE DHEFEENLQS LEREVFLLLV QLGRGWINPS  600
NLELISLIFR GQEQWAQCDS CSKWRRLPVD ILIPPKWTCA DNAWDQNRCS CSAPDELNPR  660
ELENLLRLNR EFKKRRTMTS NRPNQGHESS GLDALANAAI LGDSVGDPGT TSVATTTKHP  720
RHRPGCSCIV CIQPPSGKGK HKPTCTCNVC MTVKRRFKTL MMRKKKRQSE REAEIAQRNQ  780
QTWGSRDEAE VDSTSRHASS HLDPSENEAR SANELESKSQ SKLVDTGKGH LDLNCHPDQE  840
EELQAGSKRM SMMSLLQEAS LPLETYLKQN GLTLTSLITE QQASSASQIP PHASNENEGQ  900
LNEDCCFVSA EQEREGGGEE DCGPDLSQND AQS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	2e-68	311	440	2	131	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	753	764	KRRFKTLMMRKK
2	753	766	KRRFKTLMMRKKKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023898448.1	0.0	B3 domain-containing transcription repressor VAL2 isoform X1
Swissprot	Q6Z3U3	0.0	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A2N9HW39	0.0	A0A2N9HW39_FAGSY; Uncharacterized protein
STRING	EOY04456	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11018	32	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	HSI2-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]