PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01927-augustus-gene-0.11-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family LBD
Protein Properties Length: 171aa    MW: 18485.1 Da    PI: 8.3842
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01927-augustus-gene-0.11-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260146.47.9e-46131121100
                                         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvye 64 
                                                    +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++lp ++r da+ss+vye
  maker-scaffold01927-augustus-gene-0.11-mRNA-1  13 PCAACKLLRRRCAQDCVFAPYFPADDPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYE 76 
                                                    7*************************************************************** PP

                                         DUF260  65 AearardPvyGavgvilklqqqleqlkaelallkee 100
                                                    A+ar+rdPvyG+vg i++lqqq++ l+++lal+++e
  maker-scaffold01927-augustus-gene-0.11-mRNA-1  77 ANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQAE 112
                                                    *******************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.48312113IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-4513110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MKESGRKQGA PSPCAACKLL RRRCAQDCVF APYFPADDPQ KFANVHKVFG ASNVNKMLQE  60
LPVHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID VLQTQLALAQ AEVVHLRVRQ  120
TASMPNHGVG PGSPSSSGSP SSRLMGSQVK PIFDMDMVVD QAHLGESMWS C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-5091267124LOB family transfactor Ramosa2.1
5ly0_B1e-5091267124LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022777251.11e-113LOB domain-containing protein 4 isoform X1
SwissprotQ9SHE96e-83LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A314YWZ31e-108A0A314YWZ3_PRUYE; LOB domain-containing protein 4
STRINGXP_009353911.11e-108(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133434105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.14e-85LOB domain-containing protein 4