PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01803-snap-gene-0.30-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 1079aa    MW: 120911 Da    PI: 9.1932
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01803-snap-gene-0.30-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-103168140
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
                            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                                               r  W++eE e++++a +++G++ Wk++a+ +  +R+ +++
  maker-scaffold01803-snap-gene-0.30-mRNA-1 31 RPQWSKEELERFYEAYRKYGKD-WKKVAAVVR-NRSIEMV 68
                                               678*****************99.*********.**98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.47E-103076IPR009057Homeodomain-like
SMARTSM007177.9E-73078IPR001005SANT/Myb domain
PROSITE profilePS500906.3073064IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.3E-63068IPR009057Homeodomain-like
PfamPF002493.0E-93168IPR001005SANT/Myb domain
CDDcd001671.24E-63468No hitNo description
PfamPF065844.3E-33641741IPR033471DIRP domain
SMARTSM011356.1E-59641742IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1079 aa     Download sequence    Send to blast
MAPTRKSRSV KRFSTINEVP HEKDGRNLGK RPQWSKEELE RFYEAYRKYG KDWKKVAAVV  60
RNRSIEMVEA LYTTNRAYLS LPEGTASVVG LIAMMTDYYN VLEESDSERE SNEALTSEKP  120
LKRKRGKVQP SVSKDPCQSR SIASSDGYLS FLKRRCFDGN EPCAKGKRTP RFPVSYSLKR  180
DDAENNVSPN KRGRKSDSDA NDDEVAHGAA LALAEVSQRG GSPQISQTPY RRTEHIKSAP  240
LRTWGKMYQQ SGTAQANLCY AAMDENWLEG SIGSRGVENG DYARDTSSLM DMEGVGTVEV  300
RRKGKKFYRK KEKVQDIANH QYDDGGEACS GTEEGLNSGV SKGKFDIEVS NSKSERFSPQ  360
GQRKRSKKLS FGGESTGLDA LLELADLSLK MPISTMESDS SVQLKEERAI LDMDDKASLP  420
EAMSTSHCAD KIKFLGSKQK ARHAIAGVDG TTSRKLKIGR DSAIDVNVAS EEKEQLQLAD  480
KAWKRKRKSM VSKMSNDKAQ TDSLLSEPLK TEVLAEEENK PVIIGKRTGQ SFTLLKPWKS  540
VRSSDGSLDS DQKRAETDIS VSTTEIPAAS QSSLPSKRKS RRKMGPPKPF LKETKSSHGN  600
RFINRHKYST SLSDRPPYLK QMLLCCLSSS LVRRWCTFEW FYSAIDYPWF AKREFVEYLN  660
HVGLGHIPRL TRVEWGVIRS SLGKPRRFSE HFLLEEREKL KQYRDSVRKH YTELRTGIRE  720
GLPTDLARPL SVGQRVIALH PKTRELYDGS VLTVDQDKCR VQFDRPEIGV WFVKDIDCMP  780
LNPLDNMPEA LKRQNITIDK FSLLSKEPQM NGHPNFGGSM MFASSGNLDK VTSPMNTFLQ  840
QGKVDTNHAI AQAKTAAIDI GSLQQEAYSQ PSMLPQNHAK EADIRALTEL TRALDKKEAL  900
LMELRSTNND IVENQNEGDC SLKDSEPFKK HYAMAFTLRK EGEDAFVRIG ETLDSIDNQS  960
DSGVPVIRSQ QLVNGGLGNQ NQLSSCKAEP LFSSDASGAK PCNDSDENEA RIPSGLITSC  1020
VATLLMIQTC TERQYPPADV AQILDSALKS LHPYCTQNLS IYREIQMCMG RIKTQILAL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023883377.10.0protein ALWAYS EARLY 2 isoform X6
TrEMBLA0A2N9ERR30.0A0A2N9ERR3_FAGSY; Uncharacterized protein
STRINGXP_008246389.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17833369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.21e-111DNA binding