PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01795-snap-gene-0.38-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 862aa    MW: 93329.2 Da    PI: 5.1668
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01795-snap-gene-0.38-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.21.6e-0992119127
                                                --S---SGGGGTS.--TTTTT-SS-SSS CS
                                    zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHgp 27 
                                                +kt+lC++f+r    C++Gd Ck+aHg+
  maker-scaffold01795-snap-gene-0.38-mRNA-1  92 WKTSLCSYFRRDSgSCSHGDECKYAHGE 119
                                                8**********877************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.1E-1389125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-789124IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-591119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.4691120IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-792119IPR000571Zinc finger, CCCH-type
CDDcd005901.63E-4191234No hitNo description
Gene3DG3DSA:3.30.70.3304.1E-5199240IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549285.02E-6199250IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168747.509306862IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533351.12E-47308334IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.12E-47366469IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.12E-47540659IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1501.7E-61557659IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138474.8E-9603661IPR025714Methyltransferase domain
CDDcd024402.05E-6605659No hitNo description
PfamPF059581.6E-6746797IPR010280(Uracil-5)-methyltransferase family
Gene3DG3DSA:3.40.50.1501.7E-61746801IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.12E-47749802IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PROSITE patternPS012300757789IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1501.7E-61837862IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.12E-47846862IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 862 aa     Download sequence    Send to blast
MAASPNNELS PIETLNSPPS TPPQMDGHES TTTITTTATT TITTQSQLDS NQEPLSNPES  60
SAAALPPLPL PVPDDAVSGE KRKREEELPP LWKTSLCSYF RRDSGSCSHG DECKYAHGEE  120
ELRPRPDNTW DPTSDRAKKA MRSETTTTTT TKKKSEVCEA EIMMTEALID DDNNGGGGGC  180
LDPELSKCLG VQFKSVKKKK GMTVGFVTFE NTEQLKTAQE ELKGKSIGNK ILKVADVIPR  240
SFDKKIRSTM ALPLNGQQTG EPSLDGENTG VSISSNGVED GDTNDDEKHG STVDGSVASA  300
RSVRDVVTPL AHMPYSDQLE HKKTSLMQNL KKLTRNARKA CPHGVSLPEW ILKSREIGGL  360
SCKLEGILES PLVNGYRNKC EFSVGYSLQG KATVGFMLGN FREGVTAVEE PVDCPNVSRI  420
ACKYASIFQD FLQQSELPIW NRFKNIGFWR QLTVREGRTP GKVVDVENSD ASISEVMLIV  480
QVCSVGLDDA VVTGEFERLA QSFAAGAIAN SPSLPLTALV VQDHQGISNA APADAPLRQL  540
PIPKAASAKL ETNDVAEARI RDTISNLQFC ISPTAFFQVN TLAAEKLYSL AGDWAGLGPD  600
TLLFDVCCGT GTIGLTLAHR VGMVIGIEMN ASAVSDAYRN AEINGIKNCK FVCAKAEDVM  660
GSLLKEYLNV PQKPDEISNT SENSDKENAT AGEKDTSIDA VLDPEESSSH DLINNKSASG  720
CSENEEQEAG SQLQKNCTSE SGNTSVQQFK NVVAIVDPPR VGLHPIVIKA LRTHPRLRRL  780
VYISCNPESL VANAIELCTP SPESIEKGNK NNRGWRNMSG TGLARHRAKS MPPSEPFQPV  840
KAMAVDLFPH TVHCELVMLL ER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A3e-1834566686371Uncharacterized RNA methyltransferase SP_1029
5xj2_A3e-1834566686371Uncharacterized RNA methyltransferase SP_1029
5xj2_B3e-1834566686371Uncharacterized RNA methyltransferase SP_1029
5xj2_C3e-1834566686371Uncharacterized RNA methyltransferase SP_1029
5xj2_D3e-1834566686371Uncharacterized RNA methyltransferase SP_1029
5zq1_A4e-1834566686371Uncharacterized RNA methyltransferase SP_1029
5zq8_A3e-1834566686371Uncharacterized RNA methyltransferase SP_1029
5zq8_B3e-1834566686371Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023923876.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A2N9HWI40.0A0A2N9HWI4_FAGSY; Uncharacterized protein
STRINGcassava4.1_001501m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88541720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]